Variant report

Variant	rs2648736
Chromosome Location	chr5:52067948-52067949
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs16880238	1.00[EUR][1000 genomes]
rs16880266	1.00[EUR][1000 genomes]
rs2548507	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2648732	1.00[EUR][1000 genomes]
rs2648737	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs3096173	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754787	chr5:51688543-52193243	Enhancers Active TSS Genic enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv462187	chr5:51758804-52333420	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv598163	chr5:51758804-52333420	Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
4	nsv471013	chr5:51779197-52339114	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
5	nsv1027410	chr5:52022713-52103360	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
6	nsv1024123	chr5:52052104-52089545	Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1020640	chr5:52058830-52120858	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:52053200-52069600	Weak transcription	Right Atrium	heart
2	chr5:52066000-52070400	Enhancers	Dnd41	blood
3	chr5:52066800-52072600	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr5:52067000-52068200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
5	chr5:52067000-52068400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
6	chr5:52067000-52068400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr5:52067000-52070400	Enhancers	Primary T killer memory cells from peripheral blood	blood
8	chr5:52067000-52070800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr5:52067000-52070800	Enhancers	Primary T helper naive cells from peripheral blood	blood
10	chr5:52067000-52073200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr5:52067200-52068000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr5:52067400-52068400	Flanking Active TSS	Primary T cells from cord blood	blood
13	chr5:52067600-52069800	Weak transcription	Fetal Thymus	thymus
14	chr5:52067800-52068000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
15	chr5:52067800-52068200	Flanking Active TSS	GM12878-XiMat	blood
16	chr5:52067800-52069800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr5:52067800-52069800	Weak transcription	Small Intestine	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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