Variant report

Variant	rs265088
Chromosome Location	chr9:71130301-71130302
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:69443336..69444165-chr9:71129673..71130579,2	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs73447659	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73449506	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427847	chr9:70318730-71153527	Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:71117600-71142800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr9:71122200-71133200	Weak transcription	Ovary	ovary
3	chr9:71122400-71132000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr9:71122600-71132400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr9:71124000-71130600	Weak transcription	Stomach Mucosa	stomach
6	chr9:71124800-71133200	Weak transcription	Fetal Muscle Trunk	muscle
7	chr9:71127400-71132800	Weak transcription	Fetal Lung	lung
8	chr9:71127400-71132800	Weak transcription	Fetal Muscle Leg	muscle
9	chr9:71128400-71131600	Enhancers	Right Ventricle	heart
10	chr9:71128400-71131600	Enhancers	Hela-S3	cervix
11	chr9:71129000-71130600	Enhancers	Colon Smooth Muscle	Colon
12	chr9:71129000-71131000	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr9:71129000-71131400	Enhancers	Placenta Amnion	Placenta Amnion
14	chr9:71129000-71131400	Enhancers	Right Atrium	heart
15	chr9:71129000-71131800	Enhancers	Placenta	Placenta
16	chr9:71129600-71130400	Strong transcription	Duodenum Smooth Muscle	Duodenum
17	chr9:71129600-71130600	Enhancers	Fetal Intestine Large	intestine
18	chr9:71129600-71130600	Enhancers	Rectal Smooth Muscle	rectum
19	chr9:71129600-71130800	Enhancers	Rectal Mucosa Donor 31	rectum
20	chr9:71129600-71130800	Enhancers	Skeletal Muscle Female	skeletal muscle
21	chr9:71129600-71131000	Enhancers	Rectal Mucosa Donor 29	rectum
22	chr9:71129600-71131000	Enhancers	NHLF	lung
23	chr9:71129800-71130800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr9:71129800-71130800	Enhancers	Fetal Intestine Small	intestine
25	chr9:71129800-71131000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr9:71129800-71131000	Enhancers	Monocytes-CD14+_RO01746	blood
27	chr9:71129800-71131200	Enhancers	Primary monocytes fromperipheralblood	blood
28	chr9:71129800-71132800	Weak transcription	Psoas Muscle	Psoas
29	chr9:71130000-71130600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr9:71130000-71130600	Enhancers	Duodenum Mucosa	Duodenum
31	chr9:71130000-71131000	Genic enhancers	Stomach Smooth Muscle	stomach
32	chr9:71130200-71130400	Enhancers	Gastric	stomach
33	chr9:71130200-71130400	Enhancers	Left Ventricle	heart
34	chr9:71130200-71130600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr9:71130200-71130600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr9:71130200-71130600	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr9:71130200-71130600	Enhancers	Aorta	Aorta
38	chr9:71130200-71130600	Enhancers	Liver	Liver
39	chr9:71130200-71131800	Strong transcription	Fetal Stomach	stomach
40	chr9:71130200-71148000	Weak transcription	HSMMtube	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links