Variant report

Variant	rs2651311
Chromosome Location	chr3:147072486-147072487
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1354054	0.92[ASN][1000 genomes]
rs2651315	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3385588	chr3:146782324-147083081	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1013080	chr3:147008962-147167690	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv536763	chr3:147008962-147167690	Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:147072200-147072600	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
2	chr3:147072200-147072800	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr3:147072200-147073400	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
4	chr3:147072200-147075200	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr3:147072400-147072600	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr3:147072400-147072600	Flanking Bivalent TSS/Enh	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr3:147072400-147072600	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
8	chr3:147072400-147072600	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr3:147072400-147072600	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr3:147072400-147072600	Flanking Bivalent TSS/Enh	Brain Cingulate Gyrus	brain
11	chr3:147072400-147072600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
12	chr3:147072400-147072600	Bivalent Enhancer	Fetal Stomach	stomach
13	chr3:147072400-147072600	Flanking Bivalent TSS/Enh	Psoas Muscle	Psoas
14	chr3:147072400-147072600	Flanking Bivalent TSS/Enh	Right Ventricle	heart
15	chr3:147072400-147072800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
16	chr3:147072400-147072800	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr3:147072400-147072800	Bivalent Enhancer	Brain Anterior Caudate	brain
18	chr3:147072400-147072800	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
19	chr3:147072400-147072800	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
20	chr3:147072400-147072800	Bivalent/Poised TSS	Brain Substantia Nigra	brain
21	chr3:147072400-147072800	Bivalent/Poised TSS	Right Atrium	heart
22	chr3:147072400-147072800	Flanking Bivalent TSS/Enh	NH-A	brain
23	chr3:147072400-147073000	Flanking Bivalent TSS/Enh	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr3:147072400-147073000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
25	chr3:147072400-147073000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr3:147072400-147073000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
27	chr3:147072400-147073000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr3:147072400-147073200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
29	chr3:147072400-147073200	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
30	chr3:147072400-147073200	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
31	chr3:147072400-147073200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
32	chr3:147072400-147073200	Bivalent Enhancer	Fetal Muscle Leg	muscle
33	chr3:147072400-147073400	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
34	chr3:147072400-147073600	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell

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