Variant report

Variant	rs265428
Chromosome Location	chr5:114557727-114557728
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:114556532..114558761-chr5:114560403..114562493,2	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1363236	1.00[CHD][hapmap];1.00[GIH][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17137577	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.90[LWK][hapmap];0.85[MEX][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17137584	0.92[ASW][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap]
rs17459137	0.87[GIH][hapmap]
rs187852	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs265422	0.91[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs265423	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs265427	1.00[CEU][hapmap];0.94[YRI][hapmap];0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs265431	1.00[CEU][hapmap];0.89[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs265432	1.00[CEU][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs265433	0.90[CEU][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs265434	0.91[CEU][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs265440	0.91[CEU][hapmap];1.00[GIH][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs265441	0.82[CEU][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs265443	1.00[CEU][hapmap];0.95[YRI][hapmap];0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs265444	0.91[CEU][hapmap];0.82[EUR][1000 genomes]
rs62383167	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7700478	0.83[ASW][hapmap];0.91[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.93[LWK][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7703101	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830454	chr5:114453864-114607159	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1029371	chr5:114541428-114590891	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:114523400-114576200	Weak transcription	Psoas Muscle	Psoas
2	chr5:114528000-114563000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr5:114529200-114562600	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr5:114530200-114562600	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr5:114530200-114562600	Weak transcription	Stomach Smooth Muscle	stomach
6	chr5:114530600-114594400	Weak transcription	Pancreas	Pancrea
7	chr5:114530800-114565200	Weak transcription	NHDF-Ad	bronchial
8	chr5:114531000-114558800	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr5:114538400-114567000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr5:114538400-114572000	Weak transcription	Lung	lung
11	chr5:114539200-114580200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr5:114539800-114566000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr5:114540800-114567600	Weak transcription	Hela-S3	cervix
14	chr5:114541000-114562000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr5:114541800-114573400	Weak transcription	NHLF	lung
16	chr5:114542000-114575800	Weak transcription	Small Intestine	intestine
17	chr5:114543600-114558800	Weak transcription	NH-A	brain
18	chr5:114543600-114562400	Weak transcription	HUVEC	blood vessel
19	chr5:114543800-114562800	Weak transcription	Colon Smooth Muscle	Colon
20	chr5:114543800-114565400	Weak transcription	Brain Hippocampus Middle	brain
21	chr5:114543800-114577800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr5:114545400-114562400	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr5:114545400-114563200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
24	chr5:114546000-114562600	Weak transcription	GM12878-XiMat	blood
25	chr5:114546000-114563000	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr5:114546600-114560800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr5:114546800-114575600	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr5:114546800-114578000	Strong transcription	Monocytes-CD14+_RO01746	blood
29	chr5:114547600-114563800	Weak transcription	Thymus	Thymus
30	chr5:114547600-114577600	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr5:114547800-114559000	Weak transcription	Spleen	Spleen
32	chr5:114547800-114578400	Weak transcription	Esophagus	oesophagus
33	chr5:114547800-114596600	Weak transcription	Brain Germinal Matrix	brain
34	chr5:114548400-114596800	Weak transcription	K562	blood
35	chr5:114548600-114562400	Weak transcription	Fetal Kidney	kidney
36	chr5:114548600-114563000	Weak transcription	Colonic Mucosa	Colon
37	chr5:114548800-114575400	Weak transcription	Brain Substantia Nigra	brain
38	chr5:114549400-114562800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr5:114549400-114597200	Weak transcription	Aorta	Aorta
40	chr5:114549600-114562000	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr5:114549600-114562800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
42	chr5:114549600-114563000	Weak transcription	Ovary	ovary
43	chr5:114549600-114564600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
44	chr5:114549600-114565400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
45	chr5:114549600-114565600	Weak transcription	Osteobl	bone
46	chr5:114549600-114574400	Weak transcription	HMEC	breast
47	chr5:114549800-114559000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr5:114549800-114562800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
49	chr5:114550000-114558800	Weak transcription	Fetal Brain Female	brain
50	chr5:114550200-114568400	Weak transcription	NHEK	skin

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