Variant report

Variant	rs2655041
Chromosome Location	chr3:105691229-105691230
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs12629477	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12634793	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1394114	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2134720	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2618322	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2618323	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2618324	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2618325	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2618326	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2618330	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2618331	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2618332	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2618333	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2618334	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2618335	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2655038	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2655039	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2655040	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2655042	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2655043	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2655044	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2655045	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2655046	0.80[ASN][1000 genomes]
rs2655047	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2938360	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2971343	0.84[ASN][1000 genomes]
rs3105361	0.89[ASN][1000 genomes]
rs3110594	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6775051	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6787962	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6799241	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9817138	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877312	chr3:105560638-105916506	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv999883	chr3:105687634-106007792	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv3352561	chr3:105690962-105693360	ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:105689800-105691600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr3:105689800-105691600	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:105690600-105691400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell

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