Variant report

Variant	rs2655056
Chromosome Location	chr9:98076913-98076914
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:98054521..98056977-chr9:98076532..98078926,2	K562	blood:
2	chr9:98067922..98070273-chr9:98076676..98079113,2	MCF-7	breast:
3	chr9:98075413..98077015-chr9:98078427..98080520,2	K562	blood:
4	chr9:98070196..98076913-chr9:98077454..98080836,13	K562	blood:
5	chr9:98070528..98077616-chr9:98077726..98081396,9	MCF-7	breast:
6	chr9:98065148..98068101-chr9:98075705..98077262,2	K562	blood:

Variant related genes	Relation type
ENSG00000230221	Chromatin interaction
ENSG00000158169	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs356664	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs473825	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs554879	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs675781	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831657	chr9:97959274-98204769	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98069000-98077200	Weak transcription	Hela-S3	cervix
2	chr9:98069000-98077400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr9:98069000-98077400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr9:98074800-98077400	Weak transcription	K562	blood
5	chr9:98075400-98078400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr9:98075400-98078600	Weak transcription	Stomach Mucosa	stomach
7	chr9:98075600-98077600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr9:98075600-98078600	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr9:98075600-98079000	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr9:98075600-98079200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr9:98075800-98077400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr9:98075800-98077400	Weak transcription	Lung	lung
13	chr9:98075800-98077400	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr9:98075800-98077600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr9:98075800-98077600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr9:98075800-98077600	Weak transcription	Brain Germinal Matrix	brain
17	chr9:98075800-98078200	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr9:98075800-98078400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr9:98075800-98078600	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr9:98075800-98078600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr9:98075800-98078600	Weak transcription	Primary B cells from peripheral blood	blood
22	chr9:98075800-98078600	Weak transcription	Primary T cells from cord blood	blood
23	chr9:98075800-98078600	Weak transcription	Adipose Nuclei	Adipose
24	chr9:98075800-98078600	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr9:98075800-98078600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr9:98075800-98078600	Weak transcription	Brain Substantia Nigra	brain
27	chr9:98075800-98078600	Weak transcription	Colonic Mucosa	Colon
28	chr9:98075800-98078600	Weak transcription	Pancreas	Pancrea
29	chr9:98075800-98078600	Weak transcription	Rectal Smooth Muscle	rectum
30	chr9:98075800-98078600	Weak transcription	Right Ventricle	heart
31	chr9:98075800-98078600	Weak transcription	Thymus	Thymus
32	chr9:98075800-98078600	Weak transcription	HSMM	muscle
33	chr9:98075800-98078600	Weak transcription	HSMMtube	muscle
34	chr9:98075800-98078800	Weak transcription	Placenta	Placenta
35	chr9:98075800-98078800	Weak transcription	Psoas Muscle	Psoas
36	chr9:98075800-98079000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr9:98075800-98079000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr9:98075800-98079000	Weak transcription	Esophagus	oesophagus
39	chr9:98075800-98079000	Weak transcription	Left Ventricle	heart
40	chr9:98075800-98079000	Weak transcription	Ovary	ovary
41	chr9:98075800-98079200	Weak transcription	Gastric	stomach
42	chr9:98075800-98079200	Weak transcription	Small Intestine	intestine
43	chr9:98076000-98077200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr9:98076000-98077400	Weak transcription	H1 Cell Line	embryonic stem cell
45	chr9:98076000-98077400	Weak transcription	Cortex derived primary cultured neurospheres	brain
46	chr9:98076000-98077400	Weak transcription	Fetal Intestine Large	intestine
47	chr9:98076000-98077400	Weak transcription	Fetal Intestine Small	intestine
48	chr9:98076000-98077400	Weak transcription	Fetal Thymus	thymus
49	chr9:98076000-98077400	Weak transcription	NHLF	lung
50	chr9:98076000-98077600	Weak transcription	Fetal Muscle Leg	muscle

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