The 2.0 version of rSNPBase

Variant report

Variant rs2655813
Chromosome Location chr1:144598889-144598890
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:98 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:144594400-144604600 Weak transcription Sigmoid Colon Sigmoid Colon
2 chr1:144594600-144600800 Weak transcription Colonic Mucosa Colon
3 chr1:144594600-144601800 Weak transcription Esophagus oesophagus
4 chr1:144594600-144603800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
5 chr1:144594600-144621200 Weak transcription Gastric stomach
6 chr1:144594600-144622000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
7 chr1:144594600-144622000 Weak transcription Placenta Placenta
8 chr1:144594800-144599000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
9 chr1:144594800-144602200 Weak transcription Skeletal Muscle Male skeletal muscle
10 chr1:144594800-144602800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
11 chr1:144594800-144604000 Weak transcription K562 blood
12 chr1:144594800-144607200 Weak transcription Left Ventricle heart
13 chr1:144594800-144607200 Weak transcription Lung lung
14 chr1:144594800-144607200 Weak transcription Stomach Smooth Muscle stomach
15 chr1:144594800-144607600 Weak transcription Brain Substantia Nigra brain
16 chr1:144594800-144608000 Weak transcription Brain Inferior Temporal Lobe brain
17 chr1:144594800-144608000 Weak transcription Fetal Brain Male brain
18 chr1:144594800-144608600 Weak transcription Psoas Muscle Psoas
19 chr1:144594800-144609000 Weak transcription A549 lung
20 chr1:144594800-144609000 Weak transcription GM12878-XiMat blood
21 chr1:144594800-144609200 Weak transcription Brain Hippocampus Middle brain
22 chr1:144594800-144618000 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
23 chr1:144594800-144618000 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
24 chr1:144594800-144618000 Weak transcription Primary Natural Killer cells fromperipheralblood blood
25 chr1:144594800-144618000 Weak transcription Adipose Nuclei Adipose
26 chr1:144594800-144619400 Weak transcription Aorta Aorta
27 chr1:144594800-144620000 Weak transcription Rectal Smooth Muscle rectum
28 chr1:144594800-144620200 Weak transcription Rectal Mucosa Donor 31 rectum
29 chr1:144594800-144620600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
30 chr1:144594800-144621200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
31 chr1:144594800-144621200 Weak transcription Fetal Lung lung
32 chr1:144594800-144621200 Weak transcription Rectal Mucosa Donor 29 rectum
33 chr1:144594800-144621400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
34 chr1:144594800-144621400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
35 chr1:144594800-144621600 Weak transcription HSMM muscle
36 chr1:144594800-144621800 Weak transcription Brain Germinal Matrix brain
37 chr1:144594800-144621800 Weak transcription HSMMtube muscle
38 chr1:144594800-144622000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
39 chr1:144594800-144622000 Weak transcription Duodenum Mucosa Duodenum
40 chr1:144594800-144623400 Weak transcription Primary T cells from cord blood blood
41 chr1:144594800-144623400 Weak transcription HUVEC blood vessel
42 chr1:144594800-144624000 Weak transcription Right Ventricle heart
43 chr1:144595800-144599400 Strong transcription Fetal Stomach stomach
44 chr1:144595800-144600000 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
45 chr1:144595800-144600800 Strong transcription Fetal Adrenal Gland Adrenal Gland
46 chr1:144595800-144623200 Weak transcription Primary T regulatory cells fromperipheralblood blood
47 chr1:144596000-144599400 Strong transcription Fetal Muscle Leg muscle
48 chr1:144596000-144600000 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
49 chr1:144596000-144607400 Weak transcription Breast Myoepithelial Primary Cells Breast
50 chr1:144596200-144599000 Strong transcription Liver Liver

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Last update: Aug 31, 2015