Variant report
| Variant | rs2655899 |
|---|---|
| Chromosome Location | chr12:60808945-60808946 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr12:60800545..60802133-chr12:60807687..60809552,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:34)
| rs_ID | r2[population] |
|---|---|
| rs10877422 | 0.80[ASN][1000 genomes] |
| rs10877431 | 0.88[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs10877432 | 0.88[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs11173418 | 0.80[ASN][1000 genomes] |
| rs1119988 | 0.84[ASN][1000 genomes] |
| rs1319633 | 0.80[ASN][1000 genomes] |
| rs1504459 | 0.80[ASN][1000 genomes] |
| rs1504462 | 0.80[ASN][1000 genomes] |
| rs1504463 | 0.80[ASN][1000 genomes] |
| rs1504464 | 0.80[ASN][1000 genomes] |
| rs1566846 | 1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs1566847 | 0.81[ASN][1000 genomes] |
| rs1580916 | 0.86[ASN][1000 genomes] |
| rs1604865 | 0.82[ASN][1000 genomes] |
| rs1827638 | 0.86[ASN][1000 genomes] |
| rs1857730 | 0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2102257 | 0.82[ASN][1000 genomes] |
| rs2262939 | 0.85[ASN][1000 genomes] |
| rs2455998 | 0.81[ASN][1000 genomes] |
| rs2655842 | 0.83[ASN][1000 genomes] |
| rs2655843 | 0.83[ASN][1000 genomes] |
| rs2655846 | 0.83[ASN][1000 genomes] |
| rs2655848 | 0.85[ASN][1000 genomes] |
| rs2655856 | 0.86[ASN][1000 genomes] |
| rs2655871 | 0.85[ASN][1000 genomes] |
| rs2655893 | 0.82[ASN][1000 genomes] |
| rs2731465 | 0.87[ASN][1000 genomes] |
| rs2731487 | 0.83[ASN][1000 genomes] |
| rs2731488 | 0.83[ASN][1000 genomes] |
| rs2731491 | 0.81[ASN][1000 genomes] |
| rs2731492 | 0.83[ASN][1000 genomes] |
| rs7963214 | 0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7971143 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7979532 | 0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1054287 | chr12:60601870-60861866 | Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv832431 | chr12:60626292-60809233 | Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv1047466 | chr12:60702221-61521156 | Active TSS Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 4 | nsv832432 | chr12:60801619-60968907 | Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:60808800-60810400 | Strong transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
