Variant report

Variant	rs2657425
Chromosome Location	chr4:133107093-133107094
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10007080	0.82[EUR][1000 genomes]
rs10007085	0.82[EUR][1000 genomes]
rs10029366	0.84[EUR][1000 genomes]
rs10212986	0.85[EUR][1000 genomes]
rs1039269	0.83[EUR][1000 genomes]
rs13132555	0.85[EUR][1000 genomes]
rs1353840	0.84[EUR][1000 genomes]
rs1353841	0.84[EUR][1000 genomes]
rs1499322	0.85[EUR][1000 genomes]
rs1499328	0.84[EUR][1000 genomes]
rs1499337	0.84[EUR][1000 genomes]
rs1827128	0.85[EUR][1000 genomes]
rs1846509	0.84[EUR][1000 genomes]
rs2418566	0.85[EUR][1000 genomes]
rs2648815	0.85[EUR][1000 genomes]
rs2648820	0.85[EUR][1000 genomes]
rs2657412	0.85[EUR][1000 genomes]
rs2657413	0.85[EUR][1000 genomes]
rs2657415	0.85[EUR][1000 genomes]
rs2657423	0.85[EUR][1000 genomes]
rs2657424	0.84[EUR][1000 genomes]
rs28493696	0.84[EUR][1000 genomes]
rs28619296	0.83[EUR][1000 genomes]
rs28661998	0.83[EUR][1000 genomes]
rs28885387	0.83[EUR][1000 genomes]
rs35410702	0.81[EUR][1000 genomes]
rs60224107	0.85[EUR][1000 genomes]
rs60968377	0.85[EUR][1000 genomes]
rs62317704	0.85[EUR][1000 genomes]
rs904518	0.85[EUR][1000 genomes]
rs9993946	0.82[EUR][1000 genomes]
rs9997674	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031888	chr4:132903485-133355824	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv595445	chr4:133022641-133338765	Weak transcription Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv880003	chr4:133047300-133513991	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv880004	chr4:133093090-133236522	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv967971	chr4:133099430-133111610	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
6	nsv880005	chr4:133101094-133233538	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:133102000-133110000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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