Variant report

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10466368	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11601056	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11604909	0.85[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1563445	0.80[EUR][1000 genomes]
rs1869914	0.86[CEU][hapmap]
rs1975820	0.81[EUR][1000 genomes]
rs2019814	0.90[CEU][hapmap]
rs2259633	0.86[CEU][hapmap];0.81[EUR][1000 genomes]
rs2446061	0.93[CEU][hapmap]
rs2605574	0.80[CEU][hapmap];0.80[EUR][1000 genomes]
rs2605580	0.81[EUR][1000 genomes]
rs2605581	0.93[CEU][hapmap];0.91[EUR][1000 genomes]
rs2605583	0.93[CEU][hapmap]
rs2605611	0.85[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2608214	0.93[CEU][hapmap]
rs2608215	0.87[CEU][hapmap]
rs2658775	0.86[CEU][hapmap]
rs2658777	0.81[CEU][hapmap]
rs2658778	1.00[CEU][hapmap]
rs2658779	1.00[CEU][hapmap]
rs2658781	1.00[CEU][hapmap]
rs2925355	0.83[EUR][1000 genomes]
rs3019222	0.81[EUR][1000 genomes]
rs3019223	0.81[EUR][1000 genomes]
rs3020057	0.86[CEU][hapmap]
rs3020076	0.81[EUR][1000 genomes]
rs3133443	0.87[AMR][1000 genomes]
rs56091149	0.80[EUR][1000 genomes]
rs7116173	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72972357	0.87[EUR][1000 genomes]
rs72972364	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039134	chr11:92790000-93219942	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
3	nsv1039623	chr11:93141461-93328739	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	esv2760208	chr11:93172673-93266594	Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2658791	CCDC67	cis	Thyroid	GTEx

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93198000-93199200	Enhancers	Fetal Brain Male	brain
2	chr11:93198200-93199400	Weak transcription	Fetal Brain Female	brain

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