Variant report

Variant	rs2658804
Chromosome Location	chr11:93225380-93225381
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:93225163..93228143-chr15:84362432..84365249,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000156218	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10466332	0.81[ASN][1000 genomes]
rs10466333	0.81[ASN][1000 genomes]
rs11020379	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13343173	0.85[ASN][1000 genomes]
rs2605607	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2605609	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2605610	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2658762	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2658798	0.88[ASN][1000 genomes]
rs2658803	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56240121	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv1039623	chr11:93141461-93328739	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	esv2760208	chr11:93172673-93266594	Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93207000-93239000	Weak transcription	Primary hematopoietic stem cells	blood
2	chr11:93209000-93231400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr11:93209000-93235200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr11:93209200-93229200	Weak transcription	Dnd41	blood
5	chr11:93209600-93229400	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr11:93210600-93231600	Weak transcription	A549	lung
7	chr11:93211000-93225800	Weak transcription	Thymus	Thymus
8	chr11:93211000-93253400	Weak transcription	Primary T cells from cord blood	blood
9	chr11:93211600-93243800	Weak transcription	Fetal Thymus	thymus
10	chr11:93212200-93234800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr11:93212400-93225800	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr11:93214800-93234400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr11:93215200-93225400	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr11:93215600-93225800	Weak transcription	Colonic Mucosa	Colon
15	chr11:93215600-93226000	Weak transcription	Stomach Mucosa	stomach
16	chr11:93216600-93228600	Enhancers	Liver	Liver
17	chr11:93217200-93226000	Enhancers	H1 Cell Line	embryonic stem cell
18	chr11:93218600-93254400	Weak transcription	Hela-S3	cervix
19	chr11:93218800-93231800	Weak transcription	Ovary	ovary
20	chr11:93218800-93238200	Weak transcription	Esophagus	oesophagus
21	chr11:93218800-93245800	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr11:93219400-93225800	Enhancers	HUES48 Cell Line	embryonic stem cell
23	chr11:93219800-93227600	Weak transcription	Right Ventricle	heart
24	chr11:93220200-93225600	Enhancers	iPS-15b Cell Line	embryonic stem cell
25	chr11:93220200-93228800	Strong transcription	Primary monocytes fromperipheralblood	blood
26	chr11:93220600-93225400	Weak transcription	Pancreas	Pancrea
27	chr11:93220600-93230600	Weak transcription	Primary neutrophils fromperipheralblood	blood
28	chr11:93220600-93230800	Weak transcription	Colon Smooth Muscle	Colon
29	chr11:93220600-93232000	Weak transcription	Left Ventricle	heart
30	chr11:93220800-93225400	Enhancers	iPS-20b Cell Line	embryonic stem cell
31	chr11:93220800-93226400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr11:93220800-93227800	Weak transcription	Rectal Smooth Muscle	rectum
33	chr11:93220800-93235400	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr11:93221000-93225600	Enhancers	HepG2	liver
35	chr11:93221200-93225400	Strong transcription	Fetal Intestine Small	intestine
36	chr11:93221200-93228000	Weak transcription	HSMMtube	muscle
37	chr11:93221800-93226000	Enhancers	HUES6 Cell Line	embryonic stem cell
38	chr11:93222000-93231600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr11:93222200-93232000	Weak transcription	Spleen	Spleen
40	chr11:93222400-93226400	Weak transcription	Gastric	stomach
41	chr11:93222400-93227200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr11:93222400-93238000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
43	chr11:93222800-93225600	Enhancers	ES-I3 Cell Line	embryonic stem cell
44	chr11:93222800-93225800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr11:93222800-93225800	Weak transcription	Lung	lung
46	chr11:93222800-93226200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr11:93222800-93231800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
48	chr11:93222800-93236000	Weak transcription	Fetal Muscle Trunk	muscle
49	chr11:93223000-93225600	Enhancers	H9 Cell Line	embryonic stem cell
50	chr11:93223000-93226000	Enhancers	Stomach Smooth Muscle	stomach

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