Variant report

Variant	rs2659910
Chromosome Location	chr7:66158913-66158914
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:66151342..66153524-chr7:66155047..66159440,3	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs2016705	0.83[AMR][1000 genomes]
rs58026597	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532124	chr7:65371521-66234730	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	125 gene(s)	inside rSNPs	diseases
2	nsv1026559	chr7:65617368-66370805	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	116 gene(s)	inside rSNPs	diseases
3	esv3385090	chr7:66146376-66205022	Weak transcription Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	esv3401338	chr7:66147493-66206298	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:66148000-66161800	Weak transcription	Left Ventricle	heart
2	chr7:66148000-66161800	Weak transcription	Right Atrium	heart
3	chr7:66148000-66165600	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr7:66148000-66177600	Weak transcription	Aorta	Aorta
5	chr7:66148200-66161800	Weak transcription	Psoas Muscle	Psoas
6	chr7:66148200-66162000	Weak transcription	Gastric	stomach
7	chr7:66148200-66162000	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr7:66148200-66175600	Weak transcription	Primary B cells from cord blood	blood
9	chr7:66148400-66159000	Weak transcription	Placenta	Placenta
10	chr7:66148400-66159000	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr7:66148400-66159200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr7:66148400-66161600	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr7:66148400-66161600	Weak transcription	Brain Substantia Nigra	brain
14	chr7:66148400-66161800	Weak transcription	Brain Cingulate Gyrus	brain
15	chr7:66148400-66161800	Weak transcription	Colon Smooth Muscle	Colon
16	chr7:66148400-66178400	Weak transcription	Duodenum Mucosa	Duodenum
17	chr7:66148400-66182400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr7:66148400-66184400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr7:66148400-66184800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr7:66148600-66161800	Weak transcription	Brain Angular Gyrus	brain
21	chr7:66148600-66161800	Weak transcription	NH-A	brain
22	chr7:66148600-66172400	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr7:66148600-66177400	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr7:66149000-66177600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr7:66149000-66199600	Weak transcription	Thymus	Thymus
26	chr7:66149200-66159000	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr7:66149200-66161800	Weak transcription	Brain Hippocampus Middle	brain
28	chr7:66149600-66159000	Weak transcription	Liver	Liver
29	chr7:66149600-66161800	Weak transcription	Adipose Nuclei	Adipose
30	chr7:66149600-66161800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr7:66149600-66178400	Weak transcription	GM12878-XiMat	blood
32	chr7:66149600-66190200	Weak transcription	Hela-S3	cervix
33	chr7:66149800-66159000	Weak transcription	Pancreas	Pancrea
34	chr7:66150400-66161600	Weak transcription	HepG2	liver
35	chr7:66151000-66161800	Weak transcription	Right Ventricle	heart
36	chr7:66151400-66178400	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr7:66153400-66178400	Weak transcription	Fetal Kidney	kidney
38	chr7:66153400-66182200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr7:66153600-66172200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr7:66153600-66174200	Weak transcription	Primary hematopoietic stem cells	blood
41	chr7:66153800-66159000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
42	chr7:66153800-66160800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr7:66153800-66167800	Weak transcription	Primary neutrophils fromperipheralblood	blood
44	chr7:66154000-66172600	Weak transcription	Primary T cells fromperipheralblood	blood
45	chr7:66154200-66172400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr7:66154200-66177400	Weak transcription	Fetal Intestine Large	intestine
47	chr7:66155200-66178400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
48	chr7:66156000-66159200	Weak transcription	Brain Anterior Caudate	brain
49	chr7:66156600-66160400	Weak transcription	HSMM	muscle
50	chr7:66156600-66160600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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