Variant report

Variant	rs266099
Chromosome Location	chr10:44860013-44860014
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44858744..44861385-chr10:44862420..44864353,3	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1023265	0.85[YRI][hapmap];0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs266086	0.84[ASW][hapmap];1.00[LWK][hapmap];0.97[MKK][hapmap];0.89[YRI][hapmap];0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1052337	chr10:44821390-44865015	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	nsv1054649	chr10:44848921-44889713	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44838600-44867400	Weak transcription	Spleen	Spleen
2	chr10:44848200-44864600	Weak transcription	Fetal Kidney	kidney
3	chr10:44848200-44865000	Weak transcription	Osteobl	bone
4	chr10:44848400-44865000	Weak transcription	Right Atrium	heart
5	chr10:44848400-44867400	Weak transcription	Adipose Nuclei	Adipose
6	chr10:44848400-44867600	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr10:44849400-44869000	Weak transcription	Right Ventricle	heart
8	chr10:44849800-44864800	Weak transcription	Left Ventricle	heart
9	chr10:44850600-44877600	Weak transcription	Duodenum Mucosa	Duodenum
10	chr10:44854000-44865800	Weak transcription	Fetal Intestine Small	intestine
11	chr10:44854200-44862400	Weak transcription	Ovary	ovary
12	chr10:44854200-44867200	Weak transcription	Colon Smooth Muscle	Colon
13	chr10:44854400-44869000	Weak transcription	Brain Substantia Nigra	brain
14	chr10:44854800-44863600	Weak transcription	Fetal Lung	lung
15	chr10:44856200-44865000	Weak transcription	Aorta	Aorta
16	chr10:44858000-44860400	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr10:44858000-44864200	Strong transcription	Fetal Stomach	stomach
18	chr10:44858400-44860200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr10:44858600-44864600	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr10:44858800-44863000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr10:44858800-44866600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr10:44859000-44860600	Weak transcription	Pancreas	Pancrea
23	chr10:44859000-44862600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr10:44859000-44864200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr10:44859000-44864800	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr10:44859000-44865000	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr10:44859000-44865000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr10:44859000-44871800	Weak transcription	Psoas Muscle	Psoas
29	chr10:44859200-44864200	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr10:44859200-44864600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr10:44859800-44862000	Weak transcription	Fetal Muscle Leg	muscle
32	chr10:44859800-44864600	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr10:44860000-44860200	Enhancers	HUES6 Cell Line	embryonic stem cell
34	chr10:44860000-44862400	Weak transcription	Fetal Muscle Trunk	muscle
35	chr10:44860000-44862600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr10:44860000-44863200	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr10:44860000-44879000	Weak transcription	Gastric	stomach

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