Variant report

Variant	rs2661381
Chromosome Location	chr3:21370030-21370031
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs13060594	0.81[ASN][1000 genomes]
rs1395993	1.00[ASN][1000 genomes]
rs2661383	1.00[ASN][1000 genomes]
rs2661406	0.86[ASN][1000 genomes]
rs421433	0.83[EUR][1000 genomes]
rs587138	0.81[ASN][1000 genomes]
rs593152	0.81[ASN][1000 genomes]
rs61191084	0.92[ASN][1000 genomes]
rs617991	0.81[ASN][1000 genomes]
rs619880	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs694097	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756980	chr3:21205670-21376648	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv2759133	chr3:21205670-21376648	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv999385	chr3:21212543-21370660	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv35115	chr3:21241656-21378739	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv834630	chr3:21311619-21491327	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1011516	chr3:21337788-21472093	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv876609	chr3:21337956-21424985	Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv876610	chr3:21345639-21424985	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv876611	chr3:21365934-21414060	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:21368400-21371400	Weak transcription	Ovary	ovary
2	chr3:21368800-21371200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr3:21369000-21370200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr3:21369000-21371200	Weak transcription	Brain Germinal Matrix	brain
5	chr3:21369000-21373600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr3:21370000-21370200	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
7	chr3:21370000-21370400	Flanking Active TSS	Fetal Brain Female	brain
8	chr3:21370000-21371600	Enhancers	Fetal Brain Male	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links