Variant report

Variant	rs2663042
Chromosome Location	chr10:50107769-50107770
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:50105441..50108221-chr10:50110037..50113154,4	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1871605	0.83[AFR][1000 genomes]
rs1871607	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2457215	1.00[AMR][1000 genomes]
rs2663039	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2663065	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2671693	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831865	chr10:49994254-50164239	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50072800-50126200	Strong transcription	Primary B cells from peripheral blood	blood
2	chr10:50074600-50129600	Strong transcription	Primary B cells from cord blood	blood
3	chr10:50075400-50126000	Strong transcription	Primary neutrophils fromperipheralblood	blood
4	chr10:50088000-50109400	Weak transcription	Right Atrium	heart
5	chr10:50096600-50107800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
6	chr10:50098000-50110000	Strong transcription	Primary hematopoietic stem cells	blood
7	chr10:50098200-50110200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr10:50099600-50108400	Weak transcription	Adipose Nuclei	Adipose
9	chr10:50101600-50122800	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr10:50103400-50108400	Weak transcription	Left Ventricle	heart
11	chr10:50104000-50115800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr10:50104800-50119200	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr10:50105000-50109000	Weak transcription	Colonic Mucosa	Colon
14	chr10:50105200-50107800	Weak transcription	Fetal Muscle Leg	muscle
15	chr10:50105800-50110200	Strong transcription	GM12878-XiMat	blood
16	chr10:50106200-50108000	Weak transcription	Spleen	Spleen
17	chr10:50106200-50113600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr10:50106400-50107800	Weak transcription	Fetal Stomach	stomach
19	chr10:50106400-50107800	Weak transcription	Psoas Muscle	Psoas
20	chr10:50106800-50110200	Strong transcription	Primary T cells from cord blood	blood
21	chr10:50107000-50107800	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr10:50107000-50108000	Weak transcription	Monocytes-CD14+_RO01746	blood
23	chr10:50107000-50109000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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