Variant report

Variant	rs2663068
Chromosome Location	chr10:50160598-50160599
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:50156228..50157888-chr10:50160384..50163002,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1015717	0.89[CHB][hapmap];0.82[ASN][1000 genomes]
rs10735228	0.94[JPT][hapmap]
rs10776658	0.97[CHD][hapmap]
rs10776659	0.90[CHB][hapmap];0.97[CHD][hapmap];0.82[ASN][1000 genomes]
rs10776660	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs10857661	0.97[CHD][hapmap]
rs10857662	0.88[CHB][hapmap]
rs11101572	0.90[CHB][hapmap];1.00[CHD][hapmap];0.82[ASN][1000 genomes]
rs12413832	0.90[CHB][hapmap];0.82[ASN][1000 genomes]
rs1877799	0.94[JPT][hapmap]
rs1877800	0.94[JPT][hapmap]
rs2137913	0.82[ASN][1000 genomes]
rs2249429	0.94[JPT][hapmap]
rs2252811	0.94[JPT][hapmap]
rs2255553	0.90[ASN][1000 genomes]
rs2292585	0.94[JPT][hapmap]
rs2457466	0.97[CHD][hapmap]
rs2663028	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2663067	0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2889709	0.84[CHB][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs3750867	0.94[ASN][1000 genomes]
rs3829206	0.90[CHB][hapmap];1.00[CHD][hapmap];0.82[ASN][1000 genomes]
rs4317902	0.81[ASN][1000 genomes]
rs4614357	0.90[CHB][hapmap];1.00[CHD][hapmap]
rs4838433	0.94[JPT][hapmap]
rs6537586	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7072344	0.94[ASN][1000 genomes]
rs7082322	0.90[CHB][hapmap];1.00[CHD][hapmap];0.82[ASN][1000 genomes]
rs7083751	0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs7091429	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs7098224	0.89[CHB][hapmap];1.00[CHD][hapmap];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831865	chr10:49994254-50164239	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50143600-50164400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:50144600-50196200	Strong transcription	Primary B cells from cord blood	blood
3	chr10:50145000-50193200	Strong transcription	Primary B cells from peripheral blood	blood
4	chr10:50145400-50193200	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr10:50145800-50193400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
6	chr10:50148000-50193600	Strong transcription	Primary neutrophils fromperipheralblood	blood
7	chr10:50149600-50161200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr10:50153400-50187800	Strong transcription	GM12878-XiMat	blood
9	chr10:50153600-50193600	Strong transcription	Primary monocytes fromperipheralblood	blood
10	chr10:50154600-50162000	Weak transcription	Colon Smooth Muscle	Colon
11	chr10:50154800-50165800	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr10:50157400-50166000	Weak transcription	Primary T cells from cord blood	blood
13	chr10:50158400-50161200	Enhancers	Fetal Muscle Leg	muscle
14	chr10:50158800-50161400	Strong transcription	Spleen	Spleen
15	chr10:50159000-50160800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr10:50159200-50160800	Weak transcription	Primary hematopoietic stem cells	blood
17	chr10:50160400-50160800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr10:50160400-50161000	Enhancers	Fetal Muscle Trunk	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links