Variant report

Variant	rs2663959
Chromosome Location	chr12:63198735-63198736
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:63197370..63199384-chr12:63202046..63203931,2	MCF-7	breast:
2	chr12:63191798..63194501-chr12:63197059..63199870,2	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs2652028	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2652030	0.87[AFR][1000 genomes]
rs2652031	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2663955	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2663957	0.86[AFR][1000 genomes]
rs2663961	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2704758	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2704759	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2704761	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2704763	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2704764	0.87[AFR][1000 genomes]
rs478720	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs479646	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs500505	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs506821	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs510656	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs518285	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs535206	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs536052	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs593350	0.86[ASN][1000 genomes]
rs627273	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs639821	0.81[AFR][1000 genomes]
rs642388	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899160	chr12:63149213-63209623	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:63175200-63206800	Weak transcription	Pancreas	Pancrea
2	chr12:63180400-63199000	Weak transcription	Aorta	Aorta
3	chr12:63181200-63200400	Weak transcription	Lung	lung
4	chr12:63187800-63205200	Weak transcription	K562	blood
5	chr12:63187800-63206400	Weak transcription	Osteobl	bone
6	chr12:63187800-63206800	Weak transcription	Duodenum Mucosa	Duodenum
7	chr12:63187800-63211400	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr12:63188000-63198800	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr12:63188000-63206800	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr12:63192800-63211400	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr12:63193000-63201400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr12:63193400-63206800	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr12:63194000-63198800	Weak transcription	GM12878-XiMat	blood
14	chr12:63195400-63206000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr12:63195600-63211400	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr12:63195600-63211400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr12:63195800-63198800	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr12:63195800-63228600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr12:63196000-63198800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr12:63196000-63198800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr12:63196000-63200000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr12:63196000-63201000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr12:63196000-63206600	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr12:63196000-63206800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr12:63196000-63206800	Weak transcription	Fetal Intestine Large	intestine
26	chr12:63196000-63206800	Weak transcription	Right Ventricle	heart
27	chr12:63196000-63213600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr12:63196000-63213800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr12:63196000-63225800	Weak transcription	Gastric	stomach
30	chr12:63196400-63201400	Weak transcription	HepG2	liver
31	chr12:63196400-63213600	Weak transcription	Fetal Intestine Small	intestine
32	chr12:63197400-63206600	Weak transcription	Brain Angular Gyrus	brain
33	chr12:63198000-63206000	Weak transcription	Brain Hippocampus Middle	brain
34	chr12:63198000-63206600	Weak transcription	Brain Substantia Nigra	brain
35	chr12:63198200-63200000	Weak transcription	Ovary	ovary

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