Variant report

Variant	rs2666890
Chromosome Location	chr11:45793023-45793024
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:45361279..45362163-chr11:45793016..45794170,5	MCF-7	breast:
2	chr11:45392639..45393338-chr11:45792530..45793432,2	MCF-7	breast:
3	chr11:45392498..45393507-chr11:45792864..45793933,6	K562	blood:
4	chr11:45392850..45393454-chr11:45792586..45793366,3	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CTD-2210P24.4.1-4	chr11:45792983-45793265	NR_027134

Variant related genes	Relation type
ENSG00000255267	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11038652	0.84[ASN][1000 genomes]
rs11038653	0.84[ASN][1000 genomes]
rs11038658	0.84[ASN][1000 genomes]
rs12274152	0.83[ASN][1000 genomes]
rs12283175	0.82[ASN][1000 genomes]
rs12419733	0.82[ASN][1000 genomes]
rs12421083	0.90[CHB][hapmap];0.84[ASN][1000 genomes]
rs2457961	0.93[ASN][1000 genomes]
rs2467287	0.91[CHB][hapmap];0.98[CHD][hapmap];0.80[GIH][hapmap];0.81[JPT][hapmap];0.84[MEX][hapmap];0.94[ASN][1000 genomes]
rs4755339	0.84[ASN][1000 genomes]
rs6798	1.00[ASW][hapmap]
rs7108887	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7109178	0.84[ASN][1000 genomes]
rs7114337	0.84[ASN][1000 genomes]
rs7115967	1.00[ASW][hapmap];0.91[YRI][hapmap]
rs7116816	0.84[ASN][1000 genomes]
rs7120031	0.87[CHB][hapmap];0.93[CHD][hapmap];0.80[GIH][hapmap];0.84[ASN][1000 genomes]
rs7130242	0.84[ASN][1000 genomes]
rs7482133	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7926593	0.84[ASN][1000 genomes]
rs9787929	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45792600-45793200	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:45792600-45793200	Active TSS	Primary hematopoietic stem cells	blood
3	chr11:45792600-45793600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr11:45792600-45793600	Active TSS	Brain Substantia Nigra	brain
5	chr11:45792600-45793600	Active TSS	Fetal Kidney	kidney
6	chr11:45792600-45793600	Flanking Active TSS	Stomach Smooth Muscle	stomach
7	chr11:45792600-45793800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr11:45792600-45793800	Active TSS	Brain Anterior Caudate	brain
9	chr11:45792600-45793800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
10	chr11:45792600-45794000	Active TSS	Rectal Smooth Muscle	rectum
11	chr11:45792600-45794000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
12	chr11:45792600-45794000	Flanking Active TSS	Dnd41	blood
13	chr11:45792800-45793200	Active TSS	Primary T cells from cord blood	blood
14	chr11:45792800-45793200	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr11:45792800-45793200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr11:45792800-45793200	Active TSS	Brain Germinal Matrix	brain
17	chr11:45792800-45793200	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
18	chr11:45792800-45793200	Active TSS	NHEK	skin
19	chr11:45792800-45793400	Flanking Bivalent TSS/Enh	HepG2	liver
20	chr11:45792800-45793600	Active TSS	Primary T helper naive cells from peripheral blood	blood
21	chr11:45792800-45793600	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
22	chr11:45792800-45793600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
23	chr11:45792800-45793600	Active TSS	Colon Smooth Muscle	Colon
24	chr11:45792800-45793600	Flanking Active TSS	HSMM	muscle
25	chr11:45792800-45793600	Flanking Active TSS	K562	blood
26	chr11:45792800-45793800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
27	chr11:45792800-45793800	Active TSS	Primary T helper naive cells fromperipheralblood	blood
28	chr11:45792800-45793800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr11:45792800-45793800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr11:45792800-45793800	Active TSS	Brain Angular Gyrus	brain
31	chr11:45792800-45793800	Active TSS	Duodenum Smooth Muscle	Duodenum
32	chr11:45792800-45793800	Active TSS	Thymus	Thymus
33	chr11:45792800-45794000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
34	chr11:45792800-45794000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
35	chr11:45792800-45794000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
36	chr11:45792800-45794000	Active TSS	Brain Cingulate Gyrus	brain
37	chr11:45792800-45794000	Flanking Active TSS	GM12878-XiMat	blood
38	chr11:45792800-45794400	Flanking Active TSS	Primary B cells from cord blood	blood
39	chr11:45793000-45793200	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
40	chr11:45793000-45793200	Active TSS	Primary monocytes fromperipheralblood	blood
41	chr11:45793000-45793200	Active TSS	Primary T cells fromperipheralblood	blood
42	chr11:45793000-45793200	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
43	chr11:45793000-45793200	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
44	chr11:45793000-45793200	Active TSS	Adipose Nuclei	Adipose
45	chr11:45793000-45793200	Active TSS	Duodenum Mucosa	Duodenum
46	chr11:45793000-45793200	Flanking Active TSS	Esophagus	oesophagus
47	chr11:45793000-45793200	Active TSS	Fetal Heart	heart
48	chr11:45793000-45793200	Active TSS	Fetal Intestine Large	intestine
49	chr11:45793000-45793200	Active TSS	HSMMtube	muscle
50	chr11:45793000-45793400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin

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