Variant report

Variant	rs2669448
Chromosome Location	chr8:105372324-105372325
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:105368987..105371011-chr8:105372057..105373870,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs2458413	0.82[EUR][1000 genomes]
rs2458414	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016087	chr8:105228670-105934368	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1032775	chr8:105311364-105409972	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:105364800-105373400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr8:105365200-105373600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr8:105366400-105378200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr8:105368600-105374600	Weak transcription	Brain Cingulate Gyrus	brain
5	chr8:105370000-105374800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr8:105370400-105374200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr8:105370800-105372600	Enhancers	Muscle Satellite Cultured Cells	--
8	chr8:105371600-105373000	Enhancers	NH-A	brain
9	chr8:105371800-105373200	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr8:105371800-105373200	Enhancers	Osteobl	bone
11	chr8:105371800-105374800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr8:105372000-105373000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr8:105372000-105373200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr8:105372000-105373200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr8:105372000-105373800	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr8:105372000-105374200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr8:105372000-105375000	Enhancers	NHDF-Ad	bronchial
18	chr8:105372000-105375200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr8:105372200-105372600	Flanking Active TSS	GM12878-XiMat	blood
20	chr8:105372200-105373400	Enhancers	NHLF	lung
21	chr8:105372200-105374000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr8:105372200-105374000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr8:105372200-105374000	Enhancers	Pancreatic Islets	Pancreatic Islet
24	chr8:105372200-105374800	Enhancers	Primary hematopoietic stem cells short term culture	blood

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