Variant report

Variant	rs2669557
Chromosome Location	chr12:26173374-26173375
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SSPN-6	chr12:26173078-26173433	NONHSAT027389
2	lnc-SSPN-6	chr12:26173078-26173401	NONHSAT027385

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs2669556	1.00[YRI][hapmap]
rs2669569	1.00[YRI][hapmap]
rs2669570	1.00[YRI][hapmap]
rs2729637	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs2729650	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs706534	1.00[YRI][hapmap]
rs73300874	1.00[AFR][1000 genomes]
rs73300880	1.00[AFR][1000 genomes]
rs829982	0.85[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898931	chr12:26123345-26192936	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26167200-26174200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr12:26167400-26180600	Weak transcription	Rectal Smooth Muscle	rectum
3	chr12:26169400-26185400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr12:26169600-26182000	Weak transcription	NHLF	lung
5	chr12:26170600-26174200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr12:26170800-26174000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr12:26170800-26174200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr12:26170800-26174200	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr12:26170800-26174200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr12:26170800-26174200	Weak transcription	Brain Angular Gyrus	brain
11	chr12:26170800-26174400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr12:26170800-26174400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr12:26170800-26174400	Weak transcription	Brain Hippocampus Middle	brain
14	chr12:26170800-26174400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr12:26170800-26174400	Weak transcription	Fetal Heart	heart
16	chr12:26170800-26174400	Weak transcription	Fetal Intestine Small	intestine
17	chr12:26170800-26174400	Weak transcription	Left Ventricle	heart
18	chr12:26170800-26174400	Weak transcription	Lung	lung
19	chr12:26170800-26174400	Weak transcription	Ovary	ovary
20	chr12:26170800-26174400	Weak transcription	Right Atrium	heart
21	chr12:26170800-26174400	Weak transcription	Right Ventricle	heart
22	chr12:26170800-26174600	Weak transcription	Brain Cingulate Gyrus	brain
23	chr12:26170800-26174800	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr12:26170800-26175000	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr12:26170800-26181600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr12:26170800-26182000	Weak transcription	Pancreas	Pancrea
27	chr12:26170800-26185600	Weak transcription	Aorta	Aorta
28	chr12:26171000-26174200	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr12:26171000-26174200	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr12:26171000-26174200	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr12:26171000-26174200	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chr12:26171000-26174200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr12:26171000-26174200	Weak transcription	Brain Anterior Caudate	brain
34	chr12:26171000-26174400	Weak transcription	Brain Substantia Nigra	brain
35	chr12:26171000-26174400	Weak transcription	Stomach Smooth Muscle	stomach
36	chr12:26171000-26175400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr12:26171000-26182000	Weak transcription	HUVEC	blood vessel
38	chr12:26171000-26183800	Weak transcription	Hela-S3	cervix
39	chr12:26171000-26190600	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr12:26171200-26174200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
41	chr12:26172000-26174200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr12:26172000-26174200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
43	chr12:26172000-26182000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr12:26172200-26180200	Weak transcription	NH-A	brain
45	chr12:26172200-26180400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr12:26172200-26181800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr12:26172400-26173400	Enhancers	Muscle Satellite Cultured Cells	--
48	chr12:26172400-26180000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr12:26172600-26174400	Weak transcription	Psoas Muscle	Psoas
50	chr12:26172600-26180000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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