Variant report

Variant	rs2671697
Chromosome Location	chr10:50126006-50126007
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10745286	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10857660	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11101565	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12416524	0.99[ASN][1000 genomes]
rs17782114	0.99[ASN][1000 genomes]
rs2663057	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2671702	0.99[ASN][1000 genomes]
rs3750866	1.00[CHB][hapmap]
rs55731350	0.99[ASN][1000 genomes]
rs55806700	0.99[ASN][1000 genomes]
rs56231975	0.96[ASN][1000 genomes]
rs6537584	0.83[ASN][1000 genomes]
rs72799384	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831865	chr10:49994254-50164239	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv517287	chr10:50122181-50134266	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50072800-50126200	Strong transcription	Primary B cells from peripheral blood	blood
2	chr10:50074600-50129600	Strong transcription	Primary B cells from cord blood	blood
3	chr10:50109400-50127800	Strong transcription	Primary monocytes fromperipheralblood	blood
4	chr10:50121000-50134800	Weak transcription	Spleen	Spleen
5	chr10:50121000-50155800	Weak transcription	Primary T cells from cord blood	blood
6	chr10:50124400-50127600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr10:50124800-50131800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr10:50124800-50134400	Weak transcription	GM12878-XiMat	blood
9	chr10:50125400-50154400	Weak transcription	Primary hematopoietic stem cells	blood
10	chr10:50126000-50127400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr10:50126000-50127400	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr10:50126000-50133000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr10:50126000-50133400	Weak transcription	Primary neutrophils fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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