Variant report

Variant	rs267296
Chromosome Location	chr5:114612035-114612036
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TCF7L2	chr5:114611935-114612276	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:114599500..114601272-chr5:114611165..114613598,2	K562	blood:

Variant related genes	Relation type
CCDC112	TF binding region
ENSG00000243304	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1005056	1.00[CEU][hapmap];0.91[JPT][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1160441	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs169127	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2605182	1.00[YRI][hapmap]
rs267291	1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs267293	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs267294	0.97[EUR][1000 genomes]
rs267305	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs2909841	1.00[CEU][hapmap];0.80[CHB][hapmap];0.91[JPT][hapmap];0.92[EUR][1000 genomes]
rs2910012	0.92[EUR][1000 genomes]
rs3095906	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs4705731	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs55952947	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs58781194	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:114598800-114612200	Weak transcription	Gastric	stomach
2	chr5:114598800-114613000	Weak transcription	Esophagus	oesophagus
3	chr5:114599000-114612200	Weak transcription	Right Ventricle	heart
4	chr5:114599000-114612800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr5:114599000-114612800	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr5:114599000-114612800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr5:114599000-114612800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr5:114599000-114612800	Weak transcription	Fetal Intestine Large	intestine
9	chr5:114599000-114612800	Weak transcription	Fetal Thymus	thymus
10	chr5:114599000-114614200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr5:114599000-114617000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr5:114599000-114617200	Weak transcription	Thymus	Thymus
13	chr5:114599000-114624000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr5:114599000-114626600	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr5:114599000-114630800	Weak transcription	Psoas Muscle	Psoas
16	chr5:114599000-114631200	Weak transcription	Primary hematopoietic stem cells	blood
17	chr5:114599000-114631200	Weak transcription	HSMM	muscle
18	chr5:114599000-114631400	Weak transcription	Left Ventricle	heart
19	chr5:114599200-114612600	Weak transcription	NH-A	brain
20	chr5:114599200-114612800	Weak transcription	Primary T helper cells PMA-I stimulated	--
21	chr5:114599200-114615000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr5:114599200-114615000	Weak transcription	Fetal Brain Male	brain
23	chr5:114599200-114616400	Weak transcription	Fetal Heart	heart
24	chr5:114599200-114622000	Weak transcription	Colon Smooth Muscle	Colon
25	chr5:114599200-114631200	Weak transcription	Rectal Smooth Muscle	rectum
26	chr5:114599400-114612200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr5:114599400-114613400	Weak transcription	Hela-S3	cervix
28	chr5:114599400-114615600	Weak transcription	Brain Anterior Caudate	brain
29	chr5:114599400-114621800	Weak transcription	Brain Angular Gyrus	brain
30	chr5:114599600-114612200	Weak transcription	K562	blood
31	chr5:114599800-114612600	Weak transcription	HepG2	liver
32	chr5:114600000-114612600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr5:114601000-114612400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr5:114601200-114612400	Weak transcription	Fetal Intestine Small	intestine
35	chr5:114601200-114612400	Weak transcription	Fetal Stomach	stomach
36	chr5:114601200-114631200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr5:114601200-114631400	Weak transcription	Aorta	Aorta
38	chr5:114602400-114612800	Strong transcription	HUES64 Cell Line	embryonic stem cell
39	chr5:114602800-114612800	Strong transcription	HUES48 Cell Line	embryonic stem cell
40	chr5:114602800-114621800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr5:114604000-114612600	Weak transcription	HUVEC	blood vessel
42	chr5:114604000-114622400	Weak transcription	NHDF-Ad	bronchial
43	chr5:114604000-114630600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr5:114605000-114612800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
45	chr5:114605800-114612400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr5:114608200-114613200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
47	chr5:114609000-114612400	Weak transcription	Primary T cells fromperipheralblood	blood
48	chr5:114609800-114612200	Weak transcription	Skeletal Muscle Male	skeletal muscle
49	chr5:114609800-114617600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
50	chr5:114610000-114621400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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