Variant report

Variant	rs2673195
Chromosome Location	chr2:123842874-123842875
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1154995	0.90[AFR][1000 genomes]
rs1160011	0.90[AFR][1000 genomes]
rs12620936	0.85[AFR][1000 genomes]
rs13031371	0.88[AFR][1000 genomes]
rs2248895	0.89[AFR][1000 genomes]
rs2419071	0.90[AFR][1000 genomes]
rs2458994	0.88[AFR][1000 genomes]
rs2661001	0.92[AFR][1000 genomes]
rs2661032	0.90[AFR][1000 genomes]
rs2661035	0.88[AFR][1000 genomes]
rs2661036	0.86[AFR][1000 genomes]
rs2661041	0.90[AFR][1000 genomes]
rs2661043	0.90[AFR][1000 genomes]
rs2661044	0.92[AFR][1000 genomes]
rs2661045	0.92[AFR][1000 genomes]
rs2673187	0.88[AFR][1000 genomes]
rs2673188	0.88[AFR][1000 genomes]
rs2673189	0.90[AFR][1000 genomes]
rs2673194	0.90[AFR][1000 genomes]
rs2673196	0.92[AFR][1000 genomes]
rs2900804	0.90[AFR][1000 genomes]
rs299536	0.84[AFR][1000 genomes]
rs299546	0.88[AFR][1000 genomes]
rs299548	0.88[AFR][1000 genomes]
rs299549	0.88[AFR][1000 genomes]
rs299550	0.83[AFR][1000 genomes]
rs299551	0.88[AFR][1000 genomes]
rs299553	0.83[AFR][1000 genomes]
rs299560	0.87[AFR][1000 genomes]
rs299561	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492280	chr2:123447662-123973577	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv2760647	chr2:123678437-124619697	Weak transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv1010200	chr2:123816326-123887210	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv524501	chr2:123840759-123849482	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:123839400-123844200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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