Variant report

Variant	rs2674380
Chromosome Location	chr6:93489917-93489918
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12660126	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16870241	1.00[ASN][1000 genomes]
rs16870257	0.90[ASN][1000 genomes]
rs16870260	0.90[ASN][1000 genomes]
rs2674361	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2674363	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2674365	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2674368	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap]
rs2674381	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2812123	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886355	chr6:93166766-93530757	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1018402	chr6:93173579-93855804	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv1031496	chr6:93365937-93715883	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv428150	chr6:93409468-93587278	Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1017311	chr6:93432753-93559750	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:93488800-93490200	Enhancers	Hela-S3	cervix
2	chr6:93489200-93490000	Enhancers	HUVEC	blood vessel
3	chr6:93489400-93490000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr6:93489400-93490000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr6:93489400-93490000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr6:93489400-93490000	Enhancers	Brain Germinal Matrix	brain
7	chr6:93489400-93490000	Enhancers	NH-A	brain
8	chr6:93489400-93490200	Enhancers	Muscle Satellite Cultured Cells	--
9	chr6:93489400-93490200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr6:93489400-93490200	Enhancers	Fetal Heart	heart
11	chr6:93489400-93490200	Enhancers	HSMM	muscle
12	chr6:93489400-93490400	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr6:93489600-93490000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr6:93489600-93490000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr6:93489600-93490000	Enhancers	Fetal Lung	lung
16	chr6:93489600-93490000	Enhancers	Fetal Muscle Leg	muscle
17	chr6:93489600-93490000	Enhancers	Fetal Stomach	stomach
18	chr6:93489600-93490000	Enhancers	HMEC	breast
19	chr6:93489600-93490000	Enhancers	HSMMtube	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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