Variant report

Variant	rs2676079
Chromosome Location	chr15:33691753-33691754
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs2459472	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2596184	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2596185	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2596188	1.00[EUR][1000 genomes]
rs2596189	1.00[EUR][1000 genomes]
rs2596190	1.00[EUR][1000 genomes]
rs2596192	1.00[EUR][1000 genomes]
rs2676068	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533346	chr15:33469439-33809641	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv832963	chr15:33514798-33712442	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv832964	chr15:33608771-33784018	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv568919	chr15:33638335-33736683	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33644600-33701600	Weak transcription	Aorta	Aorta
2	chr15:33689000-33695000	Weak transcription	Fetal Muscle Leg	muscle
3	chr15:33689800-33692400	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr15:33689800-33692400	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr15:33689800-33692400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr15:33689800-33694800	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr15:33689800-33697200	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr15:33691000-33695000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr15:33691200-33692200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr15:33691200-33694800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr15:33691400-33691800	Weak transcription	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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