Variant report

Variant	rs2676505
Chromosome Location	chr2:173816914-173816915
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10490703	0.88[YRI][hapmap]
rs2468389	0.93[YRI][hapmap];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2553005	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2553006	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2553007	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2676499	1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6734119	0.84[AMR][1000 genomes]
rs6740103	0.82[YRI][hapmap]
rs938668	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834459	chr2:173735192-173926750	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173800600-173829400	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr2:173807800-173831600	Weak transcription	Left Ventricle	heart
3	chr2:173812400-173817000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr2:173813000-173818200	Weak transcription	Osteobl	bone
5	chr2:173813000-173818400	Weak transcription	NHLF	lung
6	chr2:173813600-173817600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr2:173816400-173817200	Enhancers	Thymus	Thymus
8	chr2:173816600-173820200	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr2:173816600-173831800	Weak transcription	Lung	lung
10	chr2:173816800-173817600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr2:173816800-173818800	Weak transcription	Hela-S3	cervix
12	chr2:173816800-173821600	Weak transcription	Fetal Thymus	thymus

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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