Variant report

Variant	rs267739
Chromosome Location	chr1:150938616-150938617
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:150532240..150535218-chr1:150937735..150940480,2	MCF-7	breast:
2	chr1:150938225..150939767-chr1:150968259..150969820,2	K562	blood:
3	chr1:150937219..150939370-chr1:150968361..150970746,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SETDB1-1	chr1:150938607-150938734	ENSG00000259357.1

Variant related genes	Relation type
ENSG00000203804	Chromatin interaction
ENSG00000143409	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10305742	1.00[MEX][hapmap]
rs11204728	1.00[MEX][hapmap]
rs16832391	1.00[CHB][hapmap]
rs6587534	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001897	chr1:150743271-151241600	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
2	nsv535158	chr1:150743271-151241600	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
3	nsv1008496	chr1:150845827-150970656	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
4	nsv522317	chr1:150933723-150974162	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
5	nsv522840	chr1:150933723-151347746	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	169 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs267739	AHSP	trans	lymphoblastoid	seeQTL

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:150899600-150943400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:150900200-150941800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
3	chr1:150900400-150941000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr1:150900400-150942600	Weak transcription	Stomach Mucosa	stomach
5	chr1:150900400-150944200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr1:150901000-150941600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr1:150901600-150941600	Strong transcription	Rectal Mucosa Donor 29	rectum
8	chr1:150903600-150941600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr1:150903600-150942200	Strong transcription	Dnd41	blood
10	chr1:150903600-150942800	Strong transcription	Fetal Stomach	stomach
11	chr1:150903600-150943000	Strong transcription	Primary T helper cells fromperipheralblood	blood
12	chr1:150903600-150943200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
13	chr1:150903800-150942600	Strong transcription	Fetal Thymus	thymus
14	chr1:150904400-150940800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr1:150904600-150942200	Strong transcription	Duodenum Mucosa	Duodenum
16	chr1:150904600-150942400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr1:150904600-150942400	Strong transcription	Monocytes-CD14+_RO01746	blood
18	chr1:150904600-150943400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr1:150904800-150940800	Strong transcription	Fetal Intestine Large	intestine
20	chr1:150904800-150941800	Strong transcription	Primary monocytes fromperipheralblood	blood
21	chr1:150904800-150941800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr1:150905000-150941800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr1:150905000-150942000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
24	chr1:150905000-150942400	Strong transcription	Primary neutrophils fromperipheralblood	blood
25	chr1:150905000-150943000	Strong transcription	HUES64 Cell Line	embryonic stem cell
26	chr1:150905400-150942800	Strong transcription	Fetal Muscle Leg	muscle
27	chr1:150905600-150942000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr1:150906200-150942400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr1:150906400-150941600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr1:150907000-150941600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr1:150907000-150941800	Strong transcription	Fetal Brain Female	brain
32	chr1:150907000-150942200	Strong transcription	HUES48 Cell Line	embryonic stem cell
33	chr1:150907000-150942400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr1:150907200-150941600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
35	chr1:150908400-150941800	Strong transcription	Fetal Muscle Trunk	muscle
36	chr1:150908600-150941600	Strong transcription	Sigmoid Colon	Sigmoid Colon
37	chr1:150908600-150941800	Strong transcription	Primary B cells from peripheral blood	blood
38	chr1:150908800-150940800	Strong transcription	H1 Cell Line	embryonic stem cell
39	chr1:150909200-150940600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr1:150909400-150941800	Strong transcription	Primary T cells fromperipheralblood	blood
41	chr1:150909600-150941800	Strong transcription	Stomach Smooth Muscle	stomach
42	chr1:150911400-150941600	Strong transcription	Cortex derived primary cultured neurospheres	brain
43	chr1:150912000-150941600	Strong transcription	Ovary	ovary
44	chr1:150912200-150941600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr1:150917400-150941000	Strong transcription	Fetal Intestine Small	intestine
46	chr1:150925000-150941600	Strong transcription	Lung	lung
47	chr1:150926600-150941600	Strong transcription	Primary T cells from cord blood	blood
48	chr1:150926600-150941600	Strong transcription	Primary T helper cells PMA-I stimulated	--
49	chr1:150926600-150941600	Strong transcription	Skeletal Muscle Male	skeletal muscle
50	chr1:150926800-150941600	Strong transcription	HSMMtube	muscle

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