Variant report

Variant	rs2677421
Chromosome Location	chr3:141484860-141484861
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1055893	0.82[AFR][1000 genomes]
rs2677423	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2681689	0.86[ASN][1000 genomes]
rs2681691	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6440034	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949709	chr3:141295050-142178144	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2677421	GRK7	cis	cerebellum	SCAN

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141461800-141498200	Weak transcription	Right Ventricle	heart
2	chr3:141470000-141486400	Weak transcription	Brain Hippocampus Middle	brain
3	chr3:141472000-141500800	Weak transcription	Thymus	Thymus
4	chr3:141482400-141485800	Weak transcription	Gastric	stomach
5	chr3:141482400-141488200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr3:141482600-141487200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr3:141483400-141485000	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr3:141483400-141487200	Enhancers	Primary hematopoietic stem cells	blood
9	chr3:141483400-141487600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr3:141483400-141488000	Weak transcription	K562	blood
11	chr3:141484200-141488000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr3:141484400-141485400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr3:141484400-141486200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr3:141484400-141486400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr3:141484400-141486800	Weak transcription	Lung	lung
16	chr3:141484600-141487600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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