Variant report

Variant	rs2678152
Chromosome Location	chr12:43173059-43173060
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:43157129..43159188-chr12:43172473..43174070,2	K562	blood:

Extended variants
information (count: 124 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:121)

rs_ID	r²[population]
rs1009431	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11181692	0.91[EUR][1000 genomes]
rs11181693	0.91[EUR][1000 genomes]
rs11181694	0.89[EUR][1000 genomes]
rs11181695	0.89[EUR][1000 genomes]
rs11181696	0.89[EUR][1000 genomes]
rs12227600	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1400811	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1400814	1.00[EUR][1000 genomes]
rs1517666	1.00[EUR][1000 genomes]
rs1517667	1.00[EUR][1000 genomes]
rs1517670	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1517671	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1517672	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1554248	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1554249	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1554250	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1554251	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1554252	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1607249	1.00[EUR][1000 genomes]
rs17091970	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17092061	0.90[EUR][1000 genomes]
rs1878577	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1878579	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1878580	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2037238	0.99[EUR][1000 genomes]
rs2056192	0.97[EUR][1000 genomes]
rs2056193	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2056196	0.98[EUR][1000 genomes]
rs2138862	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2252129	0.87[EUR][1000 genomes]
rs2252131	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2255231	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2255712	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2255713	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2407112	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2407113	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2459736	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2459738	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2459739	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2459740	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2459741	0.98[EUR][1000 genomes]
rs2459742	0.99[EUR][1000 genomes]
rs2459743	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2468321	1.00[EUR][1000 genomes]
rs2468322	1.00[EUR][1000 genomes]
rs2468324	1.00[EUR][1000 genomes]
rs2468325	1.00[EUR][1000 genomes]
rs2468326	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2468327	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2678102	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2678103	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2678104	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2678105	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2678108	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2678109	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2678110	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2678111	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2678112	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2678113	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2678117	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2678119	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2678132	1.00[EUR][1000 genomes]
rs2678134	1.00[EUR][1000 genomes]
rs2678135	1.00[EUR][1000 genomes]
rs2678136	1.00[EUR][1000 genomes]
rs2678137	1.00[EUR][1000 genomes]
rs2678141	0.98[EUR][1000 genomes]
rs2678143	1.00[EUR][1000 genomes]
rs2678144	1.00[EUR][1000 genomes]
rs2678145	1.00[EUR][1000 genomes]
rs2678146	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2678147	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2678148	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2678149	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2678151	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2678153	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2730965	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2730966	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2730967	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2730968	1.00[EUR][1000 genomes]
rs2730969	1.00[EUR][1000 genomes]
rs2730970	1.00[EUR][1000 genomes]
rs2730976	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2730977	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2730980	0.99[EUR][1000 genomes]
rs2730991	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2730997	1.00[EUR][1000 genomes]
rs2730998	1.00[EUR][1000 genomes]
rs2730999	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2731000	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2731002	1.00[EUR][1000 genomes]
rs2731003	1.00[EUR][1000 genomes]
rs2731004	1.00[EUR][1000 genomes]
rs2731010	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2731015	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2731016	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2731017	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2956457	0.96[EUR][1000 genomes]
rs35204519	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73130905	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7314719	1.00[EUR][1000 genomes]
rs7962735	0.91[EUR][1000 genomes]
rs7976494	0.91[EUR][1000 genomes]
rs7976690	0.91[EUR][1000 genomes]
rs908656	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs908657	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs908658	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs908660	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs908661	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs908662	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs908663	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs908666	0.89[EUR][1000 genomes]
rs952054	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs952056	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9651992	0.89[EUR][1000 genomes]
rs973001	1.00[EUR][1000 genomes]
rs975540	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9788178	0.91[EUR][1000 genomes]
rs981248	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs991703	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044790	chr12:42672255-43344184	Enhancers Bivalent Enhancer Strong transcription Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases
2	nsv541483	chr12:42672255-43344184	Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases
3	nsv832389	chr12:43003361-43173896	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:43170000-43180200	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr12:43172600-43173200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr12:43172600-43173200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr12:43172600-43173600	Enhancers	Right Atrium	heart
5	chr12:43172600-43174800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr12:43172600-43175400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr12:43172800-43173800	Enhancers	Skeletal Muscle Male	skeletal muscle
8	chr12:43172800-43174200	Enhancers	NHEK	skin
9	chr12:43172800-43174600	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr12:43172800-43175000	Enhancers	Fetal Heart	heart
11	chr12:43173000-43173400	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr12:43173000-43173400	Flanking Active TSS	HMEC	breast
13	chr12:43173000-43174000	Enhancers	Esophagus	oesophagus
14	chr12:43173000-43174000	Enhancers	Left Ventricle	heart
15	chr12:43173000-43174200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr12:43173000-43174200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr12:43173000-43174200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr12:43173000-43174200	Enhancers	NHDF-Ad	bronchial
19	chr12:43173000-43174400	Enhancers	Muscle Satellite Cultured Cells	--
20	chr12:43173000-43174400	Enhancers	Osteobl	bone
21	chr12:43173000-43175000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr12:43173000-43175000	Enhancers	Ovary	ovary

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