Variant report
| Variant | rs268027 |
|---|---|
| Chromosome Location | chr12:45319767-45319768 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:34)
| rs_ID | r2[population] |
|---|---|
| rs11182702 | 1.00[CHB][hapmap] |
| rs1349354 | 1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs1450557 | 1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs1450558 | 1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs2658976 | 1.00[TSI][hapmap] |
| rs268023 | 1.00[YRI][hapmap] |
| rs268024 | 0.91[YRI][hapmap] |
| rs268025 | 1.00[YRI][hapmap] |
| rs268026 | 1.00[CHB][hapmap];1.00[YRI][hapmap] |
| rs268028 | 1.00[CHB][hapmap];1.00[YRI][hapmap] |
| rs268038 | 0.91[YRI][hapmap] |
| rs268040 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2703036 | 1.00[ASW][hapmap] |
| rs2710424 | 1.00[TSI][hapmap] |
| rs2710427 | 1.00[ASW][hapmap] |
| rs372281 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs415380 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs421642 | 1.00[CHB][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs444468 | 0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56107139 | 1.00[EUR][1000 genomes] |
| rs59173350 | 0.81[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs59476102 | 1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs59796533 | 1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs7295338 | 1.00[EUR][1000 genomes] |
| rs73279107 | 0.87[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs73279120 | 1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs73279132 | 1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs73279138 | 1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs73279180 | 1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs73279189 | 1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs74080462 | 1.00[EUR][1000 genomes] |
| rs74080477 | 1.00[EUR][1000 genomes] |
| rs74080481 | 1.00[EUR][1000 genomes] |
| rs7955554 | 1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv899049 | chr12:45299202-45376053 | Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv899050 | chr12:45299202-45400614 | Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv899051 | chr12:45307633-45376053 | Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| 4 | nsv527565 | chr12:45319767-45365812 | Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
