Variant report

Variant	rs2680343
Chromosome Location	chr15:73652795-73652796
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs2680349	0.83[AFR][1000 genomes]
rs489913	0.93[AFR][1000 genomes]
rs534157	0.90[AFR][1000 genomes]
rs546377	0.88[AFR][1000 genomes]
rs61197578	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904343	chr15:73396760-73775043	Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv457202	chr15:73612377-73680301	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv569949	chr15:73612377-73680301	Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv524049	chr15:73612833-73680301	Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73644800-73655800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr15:73645000-73655400	Weak transcription	Fetal Brain Female	brain
3	chr15:73645400-73654800	Enhancers	Fetal Heart	heart
4	chr15:73646600-73653800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr15:73646800-73653600	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr15:73646800-73653800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr15:73646800-73654200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr15:73647000-73654000	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr15:73647000-73654400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr15:73648400-73653200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr15:73648400-73653600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr15:73650200-73652800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr15:73650600-73653600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr15:73651200-73655600	Enhancers	Left Ventricle	heart
15	chr15:73651200-73659000	Weak transcription	Pancreas	Pancrea
16	chr15:73651600-73658600	Enhancers	Right Ventricle	heart
17	chr15:73652400-73655000	Weak transcription	Right Atrium	heart
18	chr15:73652600-73653400	Enhancers	Ovary	ovary

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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