Variant report

Variant	rs268039
Chromosome Location	chr12:45312563-45312564
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs268024	0.82[YRI][hapmap]
rs268029	0.81[AFR][1000 genomes]
rs268032	1.00[YRI][hapmap]
rs268037	0.94[AFR][1000 genomes]
rs268038	0.82[YRI][hapmap]
rs2703044	0.83[AFR][1000 genomes]
rs2731059	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs395519	1.00[AFR][1000 genomes]
rs405751	1.00[YRI][hapmap]
rs407143	1.00[AFR][1000 genomes]
rs421642	0.82[YRI][hapmap]
rs425857	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs439541	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899049	chr12:45299202-45376053	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv899050	chr12:45299202-45400614	Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv899051	chr12:45307633-45376053	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links