Variant report

Variant	rs2682106
Chromosome Location	chr11:6378795-6378796
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10769691	0.86[ASN][1000 genomes]
rs10839556	0.82[ASN][1000 genomes]
rs10839557	0.98[ASN][1000 genomes]
rs11040871	0.88[ASN][1000 genomes]
rs11040876	0.84[ASN][1000 genomes]
rs12221724	0.98[ASN][1000 genomes]
rs2255200	0.83[CEU][hapmap]
rs2634195	0.86[ASN][1000 genomes]
rs2682086	0.86[ASN][1000 genomes]
rs2723657	0.86[ASN][1000 genomes]
rs7112142	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7112502	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530216	chr11:5614439-6468232	Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv534152	chr11:6282812-6659230	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
3	nsv1046738	chr11:6287877-6393438	Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	nsv1046995	chr11:6339868-6658766	Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:6355000-6384200	Weak transcription	Right Ventricle	heart
2	chr11:6372200-6383800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:6375000-6384000	Weak transcription	Adipose Nuclei	Adipose
4	chr11:6375200-6381000	Weak transcription	Fetal Heart	heart
5	chr11:6375200-6383400	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr11:6375200-6383800	Weak transcription	Fetal Muscle Trunk	muscle
7	chr11:6375200-6386200	Weak transcription	Stomach Mucosa	stomach
8	chr11:6375800-6379400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr11:6376200-6379200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr11:6376400-6379400	Weak transcription	Fetal Kidney	kidney
11	chr11:6377200-6378800	Enhancers	Pancreas	Pancrea
12	chr11:6377400-6378800	Enhancers	Lung	lung
13	chr11:6377400-6379400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr11:6377800-6379200	Enhancers	HMEC	breast
15	chr11:6377800-6379400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr11:6377800-6379400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr11:6377800-6379400	Enhancers	Rectal Smooth Muscle	rectum
18	chr11:6377800-6379400	Enhancers	HSMMtube	muscle
19	chr11:6377800-6379600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr11:6377800-6379600	Enhancers	Cortex derived primary cultured neurospheres	brain
21	chr11:6377800-6379600	Enhancers	NHLF	lung
22	chr11:6378000-6378800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr11:6378000-6378800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr11:6378000-6378800	Enhancers	Ovary	ovary
25	chr11:6378000-6378800	Enhancers	Placenta Amnion	Placenta Amnion
26	chr11:6378000-6379400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr11:6378000-6379400	Weak transcription	Fetal Stomach	stomach
28	chr11:6378000-6379600	Enhancers	Breast Myoepithelial Primary Cells	Breast
29	chr11:6378200-6378800	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr11:6378200-6378800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr11:6378200-6378800	Enhancers	HSMM	muscle
32	chr11:6378200-6378800	Enhancers	NHEK	skin
33	chr11:6378200-6379000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr11:6378200-6379400	Enhancers	K562	blood
35	chr11:6378400-6378800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr11:6378400-6379000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
37	chr11:6378400-6379200	Enhancers	HUES6 Cell Line	embryonic stem cell
38	chr11:6378400-6379600	Weak transcription	Liver	Liver
39	chr11:6378400-6383600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr11:6378600-6378800	Enhancers	Aorta	Aorta
41	chr11:6378600-6379000	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr11:6378600-6379000	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr11:6378600-6379200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr11:6378600-6379400	Enhancers	Muscle Satellite Cultured Cells	--
45	chr11:6378600-6379400	Enhancers	NH-A	brain
46	chr11:6378600-6379600	Enhancers	NHDF-Ad	bronchial
47	chr11:6378600-6379600	Enhancers	Osteobl	bone
48	chr11:6378600-6380600	Weak transcription	Fetal Brain Male	brain
49	chr11:6378600-6383600	Weak transcription	Stomach Smooth Muscle	stomach
50	chr11:6378600-6384000	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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