Variant report

Variant	rs2682909
Chromosome Location	chr15:77880927-77880928
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:77879891..77882724-chr15:77887714..77890230,2	K562	blood:
2	chr15:77874644..77877112-chr15:77878679..77882430,3	K562	blood:
3	chr15:77877705..77880943-chr15:77882469..77885198,3	K562	blood:
4	chr15:77879443..77881773-chr15:77883698..77885210,2	K562	blood:

Extended variants
information (count: 95 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs11072658	0.81[EUR][1000 genomes]
rs11854591	0.85[EUR][1000 genomes]
rs11856468	0.81[EUR][1000 genomes]
rs11857746	0.92[EUR][1000 genomes]
rs11857779	0.84[EUR][1000 genomes]
rs12438314	0.82[EUR][1000 genomes]
rs12591110	0.81[EUR][1000 genomes]
rs12594829	0.87[EUR][1000 genomes]
rs12906211	0.94[EUR][1000 genomes]
rs16968985	0.86[EUR][1000 genomes]
rs2667758	0.94[EUR][1000 genomes]
rs2667759	0.94[EUR][1000 genomes]
rs2667760	0.96[EUR][1000 genomes]
rs2667761	0.97[EUR][1000 genomes]
rs2667762	0.97[EUR][1000 genomes]
rs2667763	0.98[EUR][1000 genomes]
rs2667766	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2667768	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2667769	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2667770	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2667771	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2667772	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2667773	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2667774	0.82[EUR][1000 genomes]
rs2667776	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2667777	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2667778	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2667779	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2667780	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2667784	0.92[EUR][1000 genomes]
rs2682904	0.94[EUR][1000 genomes]
rs2682905	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2682906	0.96[EUR][1000 genomes]
rs2682907	0.95[EUR][1000 genomes]
rs2682908	0.97[EUR][1000 genomes]
rs2682911	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2682912	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2682913	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2682914	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2682915	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2682916	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2682918	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2682919	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2682920	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2682923	0.82[EUR][1000 genomes]
rs2682928	0.92[EUR][1000 genomes]
rs28612444	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28641836	0.85[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs35971869	0.82[EUR][1000 genomes]
rs3743481	0.82[EUR][1000 genomes]
rs55745559	0.81[EUR][1000 genomes]
rs55808627	0.86[EUR][1000 genomes]
rs55978935	0.81[EUR][1000 genomes]
rs56182742	0.87[EUR][1000 genomes]
rs56188061	0.81[EUR][1000 genomes]
rs56381229	0.81[EUR][1000 genomes]
rs58102377	0.92[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs58600827	0.95[EUR][1000 genomes]
rs59235404	0.95[EUR][1000 genomes]
rs59391831	0.95[EUR][1000 genomes]
rs60440781	0.95[EUR][1000 genomes]
rs61240175	0.95[EUR][1000 genomes]
rs7179753	0.81[EUR][1000 genomes]
rs8033468	0.81[EUR][1000 genomes]
rs8034247	0.81[EUR][1000 genomes]
rs8037691	0.81[EUR][1000 genomes]
rs867908	0.97[EUR][1000 genomes]
rs867917	0.97[EUR][1000 genomes]
rs867918	0.97[EUR][1000 genomes]
rs868297	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs868299	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs884141	0.98[EUR][1000 genomes]
rs907378	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs907379	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs907380	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs907381	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs907382	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs907384	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs907389	0.82[EUR][1000 genomes]
rs939486	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs939487	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs939491	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs939492	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs939493	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9806723	0.91[EUR][1000 genomes]
rs9806734	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv916323	chr15:77485765-78121259	Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1043284	chr15:77740632-77884026	Weak transcription Strong transcription Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv833060	chr15:77816654-78035204	Weak transcription Bivalent Enhancer Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
5	esv1806097	chr15:77817889-78301377	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
6	nsv904415	chr15:77845959-77943935	Weak transcription Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv904416	chr15:77845959-77967416	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv904417	chr15:77851535-77935992	Weak transcription Flanking Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv904418	chr15:77851535-77963887	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77874600-77881000	Weak transcription	Brain Cingulate Gyrus	brain
2	chr15:77875400-77881400	Weak transcription	Brain Hippocampus Middle	brain
3	chr15:77875600-77890000	Weak transcription	Right Ventricle	heart
4	chr15:77875600-77892000	Weak transcription	Right Atrium	heart
5	chr15:77877200-77884000	Weak transcription	Fetal Heart	heart
6	chr15:77877400-77884400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr15:77877800-77882400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr15:77880000-77881600	Bivalent Enhancer	HepG2	liver
9	chr15:77880800-77883200	Enhancers	Brain Inferior Temporal Lobe	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links