Variant report

Variant	rs2684837
Chromosome Location	chr18:44749884-44749885
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:44748229..44751768-chr18:44757535..44761625,3	K562	blood:

Variant related genes	Relation type
ENSG00000201825	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10502880	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12956009	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12957869	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12958943	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12960378	0.83[CEU][hapmap]
rs12962421	0.82[EUR][1000 genomes]
rs1355594	1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs17723389	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs17723754	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17785419	0.91[CEU][hapmap];0.82[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17785603	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1912989	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2048524	0.80[EUR][1000 genomes]
rs2251948	0.88[CEU][hapmap]
rs2461247	0.83[CEU][hapmap]
rs2571016	0.83[CEU][hapmap]
rs2576030	0.84[CEU][hapmap]
rs2576056	0.88[CEU][hapmap]
rs2576060	0.83[CEU][hapmap]
rs2635049	0.87[CEU][hapmap]
rs2668779	0.80[AMR][1000 genomes]
rs2684818	0.88[CEU][hapmap]
rs28471970	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs28628143	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs28666933	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2932126	0.87[CEU][hapmap]
rs34155040	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34939493	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3816125	0.83[CEU][hapmap]
rs7242978	0.83[CEU][hapmap]
rs7504798	0.83[CEU][hapmap]
rs8084241	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9304344	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9944807	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9948677	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9950812	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9952447	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9960264	0.83[CEU][hapmap]
rs9965170	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9629	chr18:44264693-44757511	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links