Variant report

Variant	rs268925
Chromosome Location	chr8:52918748-52918749
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:50385217..50387234-chr8:52917749..52920748,3	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1399857	0.87[ASN][1000 genomes]
rs1399858	0.87[ASN][1000 genomes]
rs1399859	0.82[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs1399860	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2017534	0.90[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs2280179	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2554461	0.90[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs2554462	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2554465	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2677208	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2677209	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs268924	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6473673	0.87[ASN][1000 genomes]
rs6473675	0.86[CHB][hapmap];0.93[JPT][hapmap];0.87[ASN][1000 genomes]
rs6473676	0.86[CHB][hapmap];0.93[JPT][hapmap];0.93[YRI][hapmap];0.84[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs6473677	0.86[CHB][hapmap];0.93[JPT][hapmap];0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6473678	0.86[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs6982212	0.86[CHB][hapmap];0.93[JPT][hapmap];0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7005809	0.87[CHB][hapmap];0.93[JPT][hapmap];0.81[YRI][hapmap];0.82[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs9298469	0.86[CHB][hapmap];0.93[JPT][hapmap];0.81[YRI][hapmap];0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817615	chr8:52252405-53023384	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:52913400-52918800	Weak transcription	Thymus	Thymus
2	chr8:52913800-52920400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr8:52913800-52920600	Weak transcription	Primary T cells from cord blood	blood
4	chr8:52914600-52920000	Weak transcription	Primary B cells from peripheral blood	blood
5	chr8:52914800-52920400	Weak transcription	GM12878-XiMat	blood
6	chr8:52916800-52920800	Weak transcription	Pancreas	Pancrea
7	chr8:52917800-52921000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr8:52918200-52919000	Enhancers	Fetal Muscle Leg	muscle
9	chr8:52918200-52919000	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr8:52918400-52919400	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr8:52918600-52919400	Enhancers	Fetal Thymus	thymus

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