Variant report

Variant	rs2689959
Chromosome Location	chr7:109212637-109212638
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1404134	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1721440	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs1721444	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1721449	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1721896	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1721900	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs1721901	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1721978	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023379	chr7:109003574-109355234	Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv608079	chr7:109098364-109862289	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1020761	chr7:109208187-109275700	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:109211800-109234000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:109212000-109219800	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr7:109212200-109217400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr7:109212200-109217800	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr7:109212200-109217800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr7:109212200-109217800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr7:109212400-109219000	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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