Variant report

Variant	rs2690076
Chromosome Location	chr6:25262741-25262742
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs1046141	1.00[CHD][hapmap]
rs11759648	1.00[CHD][hapmap]
rs11965121	1.00[TSI][hapmap]
rs1815097	1.00[EUR][1000 genomes]
rs1880270	1.00[EUR][1000 genomes]
rs1880271	1.00[CHD][hapmap]
rs1900552	1.00[CHD][hapmap]
rs2044553	1.00[CHD][hapmap]
rs2328862	1.00[EUR][1000 genomes]
rs2328869	1.00[TSI][hapmap]
rs2690043	1.00[EUR][1000 genomes]
rs2690044	1.00[EUR][1000 genomes]
rs2690045	1.00[EUR][1000 genomes]
rs2690046	1.00[EUR][1000 genomes]
rs2690047	1.00[CHD][hapmap]
rs2690048	0.81[YRI][hapmap];1.00[EUR][1000 genomes]
rs2690049	1.00[EUR][1000 genomes]
rs2690050	1.00[EUR][1000 genomes]
rs2690051	1.00[EUR][1000 genomes]
rs2690052	1.00[EUR][1000 genomes]
rs2690053	1.00[EUR][1000 genomes]
rs2690058	1.00[EUR][1000 genomes]
rs2690062	1.00[EUR][1000 genomes]
rs2690066	1.00[EUR][1000 genomes]
rs2690069	1.00[EUR][1000 genomes]
rs2690073	1.00[EUR][1000 genomes]
rs2690075	1.00[EUR][1000 genomes]
rs2690102	1.00[CHD][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs2690116	1.00[EUR][1000 genomes]
rs2690124	1.00[CHD][hapmap]
rs2744250	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2744252	0.82[YRI][hapmap];1.00[EUR][1000 genomes]
rs2744253	0.83[YRI][hapmap];1.00[EUR][1000 genomes]
rs2744255	1.00[EUR][1000 genomes]
rs2744259	1.00[EUR][1000 genomes]
rs2744260	1.00[EUR][1000 genomes]
rs2744262	1.00[EUR][1000 genomes]
rs2744263	1.00[EUR][1000 genomes]
rs2744265	1.00[EUR][1000 genomes]
rs2744266	1.00[EUR][1000 genomes]
rs2744275	1.00[EUR][1000 genomes]
rs2744276	1.00[EUR][1000 genomes]
rs2744277	1.00[EUR][1000 genomes]
rs2744278	1.00[EUR][1000 genomes]
rs2744279	1.00[EUR][1000 genomes]
rs2744280	1.00[EUR][1000 genomes]
rs2744282	1.00[CHD][hapmap]
rs2744285	1.00[EUR][1000 genomes]
rs2744286	1.00[EUR][1000 genomes]
rs2744291	1.00[EUR][1000 genomes]
rs2744292	1.00[EUR][1000 genomes]
rs34935689	1.00[EUR][1000 genomes]
rs6456653	1.00[CHD][hapmap]
rs7739830	1.00[CHD][hapmap]
rs7755584	1.00[CHD][hapmap]
rs940405	1.00[CHD][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs9467496	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023989	chr6:24930362-25285679	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv1025694	chr6:25136860-25309450	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv1020774	chr6:25154152-25285679	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv538161	chr6:25154152-25285679	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv883483	chr6:25200842-25272435	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv883484	chr6:25237288-25303100	Active TSS Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv883485	chr6:25259137-25437986	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
8	nsv883486	chr6:25260434-25422369	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
9	nsv970080	chr6:25260590-25265244	Weak transcription Enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:25254600-25263800	Weak transcription	NHEK	skin
2	chr6:25258600-25263800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr6:25262600-25263200	Enhancers	Hela-S3	cervix
4	chr6:25262600-25264200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links