Variant report

Variant	rs2690107
Chromosome Location	chr6:25330538-25330539
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs9295655	0.88[MEX][hapmap];0.87[TSI][hapmap]
rs9366617	0.94[MEX][hapmap];0.87[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883485	chr6:25259137-25437986	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv883486	chr6:25260434-25422369	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv883487	chr6:25280119-25508868	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:25306600-25331400	Weak transcription	Spleen	Spleen
2	chr6:25313800-25331400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr6:25321000-25331400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:25321600-25341200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr6:25323000-25333200	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr6:25324600-25331600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr6:25325000-25331600	Weak transcription	Adipose Nuclei	Adipose
8	chr6:25325200-25331400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr6:25325200-25331400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr6:25325200-25331400	Weak transcription	Placenta	Placenta
11	chr6:25325200-25331400	Weak transcription	Pancreas	Pancrea
12	chr6:25325200-25331400	Weak transcription	HSMMtube	muscle
13	chr6:25325200-25336400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr6:25325200-25336400	Weak transcription	Lung	lung
15	chr6:25326800-25333000	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr6:25327000-25332600	Weak transcription	Primary monocytes fromperipheralblood	blood
17	chr6:25327600-25331400	Weak transcription	Ovary	ovary
18	chr6:25327600-25332600	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr6:25327600-25337400	Weak transcription	Brain Hippocampus Middle	brain
20	chr6:25328200-25336800	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr6:25328200-25338200	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr6:25328600-25331200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr6:25328600-25331400	Weak transcription	Stomach Mucosa	stomach
24	chr6:25328600-25331600	Weak transcription	Fetal Brain Female	brain
25	chr6:25328600-25333000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr6:25328800-25331200	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr6:25329000-25336000	Enhancers	HUES48 Cell Line	embryonic stem cell
28	chr6:25329200-25330600	Enhancers	iPS-18 Cell Line	embryonic stem cell
29	chr6:25329200-25332200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr6:25329400-25330600	Enhancers	Aorta	Aorta
31	chr6:25329400-25332000	Enhancers	Fetal Intestine Small	intestine
32	chr6:25329400-25332400	Enhancers	Small Intestine	intestine
33	chr6:25329400-25336200	Enhancers	HUES6 Cell Line	embryonic stem cell
34	chr6:25329400-25336400	Enhancers	iPS-20b Cell Line	embryonic stem cell
35	chr6:25329600-25330600	Enhancers	Gastric	stomach
36	chr6:25329600-25330800	Enhancers	Fetal Intestine Large	intestine
37	chr6:25329600-25332800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr6:25329600-25336400	Enhancers	Cortex derived primary cultured neurospheres	brain
39	chr6:25329800-25330600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
40	chr6:25329800-25330800	Enhancers	Brain Germinal Matrix	brain
41	chr6:25329800-25331400	Enhancers	Primary T cells from cord blood	blood
42	chr6:25329800-25331400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr6:25330000-25330800	Enhancers	Breast Myoepithelial Primary Cells	Breast
44	chr6:25330000-25331000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr6:25330000-25331200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr6:25330000-25331200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr6:25330000-25332000	Enhancers	Primary T helper cells PMA-I stimulated	--
48	chr6:25330000-25335200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr6:25330200-25330600	Enhancers	Esophagus	oesophagus
50	chr6:25330200-25330600	Enhancers	Left Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links