Variant report

Variant	rs2690360
Chromosome Location	chr7:109233899-109233900
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10264734	0.84[ASN][1000 genomes]
rs12537605	0.84[ASN][1000 genomes]
rs12540076	0.83[ASN][1000 genomes]
rs1357690	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1464743	0.86[ASN][1000 genomes]
rs1524280	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1568778	0.80[ASN][1000 genomes]
rs1626408	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1721418	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1721420	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1721422	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1721424	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1721425	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1721426	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1721431	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1721452	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1721454	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1721456	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1721925	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1721934	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1721936	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1721938	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1721941	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1721945	0.83[EUR][1000 genomes]
rs1721946	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1721950	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1721951	0.81[ASN][1000 genomes]
rs1721953	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1916913	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2396136	0.86[ASN][1000 genomes]
rs2396137	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2690352	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2690372	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2690376	0.81[AMR][1000 genomes]
rs4730395	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6949142	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023379	chr7:109003574-109355234	Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv608079	chr7:109098364-109862289	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1020761	chr7:109208187-109275700	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:109211800-109234000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:109221200-109234400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr7:109228400-109237800	Active TSS	iPS-15b Cell Line	embryonic stem cell
4	chr7:109229600-109234400	Active TSS	ES-I3 Cell Line	embryonic stem cell
5	chr7:109230800-109237400	Active TSS	H9 Cell Line	embryonic stem cell
6	chr7:109230800-109237800	Active TSS	HUES6 Cell Line	embryonic stem cell
7	chr7:109231800-109234400	Active TSS	iPS-18 Cell Line	embryonic stem cell
8	chr7:109232000-109234000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr7:109232400-109234000	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr7:109232400-109234000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr7:109233200-109237400	Active TSS	HUES64 Cell Line	embryonic stem cell
12	chr7:109233800-109237400	Active TSS	HUES48 Cell Line	embryonic stem cell
13	chr7:109233800-109237400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell

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