Variant report

Variant	rs2691259
Chromosome Location	chr19:51567650-51567651
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs2736435	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv524556	chr19:51565975-51572068	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	esv34104	chr19:51566170-51641675	Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv819004	chr19:51566937-51569403	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:51555800-51567800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr19:51559800-51567800	Weak transcription	HMEC	breast
3	chr19:51565800-51568800	Enhancers	Pancreas	Pancrea
4	chr19:51567000-51568000	Enhancers	Stomach Mucosa	stomach
5	chr19:51567200-51568600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr19:51567400-51567800	Weak transcription	Gastric	stomach
7	chr19:51567400-51567800	Weak transcription	Right Ventricle	heart
8	chr19:51567600-51567800	Enhancers	H1 Cell Line	embryonic stem cell
9	chr19:51567600-51567800	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr19:51567600-51567800	Enhancers	Esophagus	oesophagus

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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