Variant report

Variant	rs26914
Chromosome Location	chr5:60928771-60928772
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	E2F4	chr5:60928747-60928965	MCF10A-Er-Src	breast:	n/a	n/a
2	JUND	chr5:60928633-60928824	HepG2	liver:	n/a	chr5:60928759-60928770

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:60626093..60627678-chr5:60926976..60929648,2	MCF-7	breast:

Variant related genes	Relation type
C5orf64	TF binding region

Extended variants
information (count: 2 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs26913	1.00[ASW][hapmap];0.91[CEU][hapmap];0.90[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];0.96[MEX][hapmap];0.97[MKK][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs36088	0.81[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs26914	NDUFAF2	cis	cerebellum	SCAN
rs26914	FLJ37543	cis	parietal	SCAN

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:60923400-60931000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr5:60926600-60929200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr5:60926600-60929400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr5:60927200-60928800	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr5:60927200-60928800	Enhancers	Fetal Muscle Leg	muscle
6	chr5:60927600-60929000	Enhancers	Brain Angular Gyrus	brain
7	chr5:60927600-60933600	Enhancers	Brain Substantia Nigra	brain
8	chr5:60927800-60928800	Enhancers	NH-A	brain
9	chr5:60927800-60929200	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr5:60927800-60929400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr5:60927800-60929400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr5:60927800-60930200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr5:60927800-60931400	Weak transcription	HUVEC	blood vessel
14	chr5:60927800-60931600	Enhancers	Brain Hippocampus Middle	brain
15	chr5:60928000-60929200	Enhancers	Brain Anterior Caudate	brain
16	chr5:60928000-60929400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr5:60928000-60929600	Enhancers	Brain Inferior Temporal Lobe	brain
18	chr5:60928000-60933400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr5:60928200-60928800	Enhancers	H9 Cell Line	embryonic stem cell
20	chr5:60928200-60929800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr5:60928200-60930200	Weak transcription	Aorta	Aorta
22	chr5:60928200-60932000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr5:60928200-60932800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr5:60928200-60933400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr5:60928200-60933600	Enhancers	Brain Cingulate Gyrus	brain
26	chr5:60928400-60929600	Weak transcription	Right Atrium	heart
27	chr5:60928400-60933000	Weak transcription	Adipose Nuclei	Adipose
28	chr5:60928400-60954800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr5:60928600-60928800	Enhancers	Rectal Smooth Muscle	rectum
30	chr5:60928600-60932800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr5:60928600-60933200	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chr5:60928600-60933800	Weak transcription	Skeletal Muscle Male	skeletal muscle

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