Variant report

Variant	rs2692446
Chromosome Location	chr7:129614960-129614961
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1965542	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2692445	0.81[ASN][1000 genomes]
rs2692447	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2692449	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2708635	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2708638	0.82[ASN][1000 genomes]
rs2708639	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2708643	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes]
rs2708644	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2727509	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2727511	0.94[ASN][1000 genomes]
rs34438031	0.81[ASN][1000 genomes]
rs34463221	0.81[ASN][1000 genomes]
rs34629832	0.81[ASN][1000 genomes]
rs35182759	0.81[ASN][1000 genomes]
rs35793528	0.81[ASN][1000 genomes]
rs6955829	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73473720	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533849	chr7:129462947-129616625	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv831129	chr7:129525406-129702477	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:129598800-129629600	Weak transcription	Right Atrium	heart
2	chr7:129611000-129616600	Weak transcription	Placenta	Placenta
3	chr7:129613600-129615600	Enhancers	A549	lung
4	chr7:129614200-129617600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr7:129614400-129615600	Enhancers	Hela-S3	cervix
6	chr7:129614400-129617400	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr7:129614600-129615000	Weak transcription	HepG2	liver
8	chr7:129614600-129615600	Weak transcription	Pancreas	Pancrea
9	chr7:129614600-129623800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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