Variant report

Variant	rs2692683
Chromosome Location	chr3:133594179-133594180
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1608904	0.94[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2692676	0.94[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2692678	0.91[AMR][1000 genomes]
rs2692681	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2715610	0.99[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2715618	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2715629	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933605	chr3:133425907-133680641	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv829729	chr3:133444871-133620387	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133588800-133594400	Weak transcription	Spleen	Spleen
2	chr3:133588800-133595000	Weak transcription	Brain Substantia Nigra	brain
3	chr3:133590600-133594600	Weak transcription	Brain Germinal Matrix	brain
4	chr3:133590600-133606600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr3:133591400-133598200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr3:133591600-133594600	Weak transcription	Brain Anterior Caudate	brain
7	chr3:133592000-133602000	Weak transcription	Brain Angular Gyrus	brain
8	chr3:133592200-133596200	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr3:133592400-133598400	Weak transcription	Brain Cingulate Gyrus	brain
10	chr3:133592400-133602800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr3:133592400-133605800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr3:133593200-133594600	Enhancers	HUVEC	blood vessel
13	chr3:133593600-133594400	Enhancers	Primary hematopoietic stem cells	blood
14	chr3:133593800-133594200	Flanking Active TSS	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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