Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11210090	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11210093	0.88[ASN][1000 genomes]
rs12041212	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1358033	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17093667	0.83[ASN][1000 genomes]
rs2177839	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2692845	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2692849	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3001406	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4292906	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4342807	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4344271	0.83[ASN][1000 genomes]
rs4649970	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs59663011	0.83[ASN][1000 genomes]
rs61027335	0.83[ASN][1000 genomes]
rs6692856	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs74090535	0.83[ASN][1000 genomes]
rs74090538	0.83[ASN][1000 genomes]
rs74090540	0.83[ASN][1000 genomes]
rs74090541	0.83[ASN][1000 genomes]
rs74090543	0.83[ASN][1000 genomes]
rs7535137	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9425114	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9661859	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013549	chr1:73209040-73408373	Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1012319	chr1:73337418-73547086	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:73360800-73362800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr1:73361800-73362000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr1:73361800-73362200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr1:73361800-73362400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr1:73361800-73362400	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr1:73361800-73362400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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