Variant report

Variant	rs2694811
Chromosome Location	chr10:117872019-117872020
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10885859	0.86[AFR][1000 genomes]
rs2250073	1.00[AMR][1000 genomes]
rs2250554	1.00[AMR][1000 genomes]
rs2530351	1.00[AMR][1000 genomes]
rs2694778	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4394751	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428568	chr10:117806874-117972993	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv3449389	chr10:117806874-118102404	Active TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv34187	chr10:117857916-117894117	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:117857000-117872800	Weak transcription	HSMM	muscle
2	chr10:117858200-117872200	Weak transcription	Fetal Muscle Trunk	muscle
3	chr10:117859200-117875000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:117864400-117875200	Weak transcription	Fetal Muscle Leg	muscle
5	chr10:117865200-117873200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr10:117869000-117885200	Strong transcription	Fetal Stomach	stomach
7	chr10:117870800-117875000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr10:117871000-117872600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr10:117871000-117874200	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr10:117871200-117876800	Weak transcription	Liver	Liver
11	chr10:117871400-117874600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr10:117872000-117874600	Enhancers	NH-A	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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