Variant report

Variant	rs2697219
Chromosome Location	chr7:80711255-80711256
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10239474	0.86[EUR][1000 genomes]
rs10247169	0.93[EUR][1000 genomes]
rs10265624	0.91[EUR][1000 genomes]
rs10265745	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10267251	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10276120	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10277023	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10277984	0.88[EUR][1000 genomes]
rs10480510	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10480511	0.82[EUR][1000 genomes]
rs10480852	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10480853	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12533994	0.94[ASN][1000 genomes]
rs12538655	0.86[EUR][1000 genomes]
rs12538859	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12540330	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12668893	0.90[EUR][1000 genomes]
rs12707175	0.86[AFR][1000 genomes]
rs13221460	0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13240198	0.82[EUR][1000 genomes]
rs13247351	0.86[AFR][1000 genomes]
rs1528736	0.86[EUR][1000 genomes]
rs17154740	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2247480	0.81[EUR][1000 genomes]
rs2247579	0.81[EUR][1000 genomes]
rs2697222	0.93[EUR][1000 genomes]
rs2697943	0.93[EUR][1000 genomes]
rs2697944	0.93[EUR][1000 genomes]
rs2697945	0.93[EUR][1000 genomes]
rs2697946	0.93[EUR][1000 genomes]
rs28715268	0.92[EUR][1000 genomes]
rs34344876	0.86[EUR][1000 genomes]
rs35876610	0.86[EUR][1000 genomes]
rs4540349	0.80[EUR][1000 genomes]
rs4573183	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4732106	0.87[EUR][1000 genomes]
rs58949875	0.85[AFR][1000 genomes]
rs61059308	0.86[EUR][1000 genomes]
rs62465327	0.90[ASN][1000 genomes]
rs6467574	0.85[EUR][1000 genomes]
rs6944056	0.89[AFR][1000 genomes]
rs6960780	0.86[AFR][1000 genomes]
rs7789065	0.82[AFR][1000 genomes]
rs7790887	0.92[EUR][1000 genomes]
rs949733	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888524	chr7:80107798-80723062	Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv1034690	chr7:80520004-80987682	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv888551	chr7:80620397-80723062	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv888552	chr7:80683308-80755310	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv888553	chr7:80683308-80766407	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv888554	chr7:80695828-80755310	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv888555	chr7:80695828-80766407	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv888556	chr7:80695828-80797794	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80711000-80711400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr7:80711000-80712000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr7:80711000-80712000	Enhancers	Adipose Nuclei	Adipose

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