Variant report
Variant | rs2697227 |
---|---|
Chromosome Location | chr7:80722649-80722650 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:4 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr7:80716969..80719042-chr7:80721026..80723065,2 | K562 | blood: | |
2 | chr7:80547954..80550171-chr7:80721160..80725136,3 | MCF-7 | breast: | |
3 | chr7:80722580..80725248-chr7:80741058..80743556,2 | MCF-7 | breast: | |
4 | chr7:80550844..80552775-chr7:80722519..80724746,2 | MCF-7 | breast: |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000075223 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs10225640 | 0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs10234328 | 0.85[EUR][1000 genomes] |
rs10245648 | 0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs10247169 | 0.87[ASN][1000 genomes] |
rs10265624 | 0.89[ASN][1000 genomes] |
rs10265745 | 0.84[EUR][1000 genomes] |
rs10267251 | 0.83[EUR][1000 genomes] |
rs10274106 | 0.93[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs10276120 | 0.84[EUR][1000 genomes] |
rs10480510 | 0.85[EUR][1000 genomes] |
rs10480511 | 0.84[EUR][1000 genomes] |
rs10480852 | 0.85[EUR][1000 genomes] |
rs10480853 | 0.84[EUR][1000 genomes] |
rs12533994 | 0.80[EUR][1000 genomes] |
rs12534374 | 0.92[ASN][1000 genomes] |
rs12538859 | 0.85[EUR][1000 genomes] |
rs12540085 | 0.84[EUR][1000 genomes] |
rs12540330 | 0.85[EUR][1000 genomes] |
rs13221460 | 0.85[EUR][1000 genomes] |
rs13240198 | 0.84[EUR][1000 genomes] |
rs17154740 | 0.85[EUR][1000 genomes] |
rs1919369 | 0.81[EUR][1000 genomes] |
rs2247480 | 0.85[EUR][1000 genomes] |
rs2247579 | 0.85[EUR][1000 genomes] |
rs2697221 | 0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs2697222 | 0.91[ASN][1000 genomes] |
rs2697224 | 0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs2697225 | 0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs2697943 | 0.91[ASN][1000 genomes] |
rs2697944 | 0.91[ASN][1000 genomes] |
rs2697945 | 0.91[ASN][1000 genomes] |
rs2697946 | 0.91[ASN][1000 genomes] |
rs28715268 | 0.84[ASN][1000 genomes] |
rs28796047 | 0.84[EUR][1000 genomes] |
rs35758038 | 0.85[EUR][1000 genomes] |
rs3843546 | 0.84[EUR][1000 genomes] |
rs3891957 | 0.85[EUR][1000 genomes] |
rs3891958 | 0.85[EUR][1000 genomes] |
rs3902760 | 0.85[EUR][1000 genomes] |
rs4540349 | 0.83[EUR][1000 genomes] |
rs4573183 | 0.84[EUR][1000 genomes] |
rs4732107 | 0.85[EUR][1000 genomes] |
rs4732109 | 0.84[EUR][1000 genomes] |
rs58692795 | 0.85[EUR][1000 genomes] |
rs62465327 | 0.81[EUR][1000 genomes] |
rs62467389 | 0.84[EUR][1000 genomes] |
rs6467574 | 0.80[ASN][1000 genomes] |
rs6951995 | 0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs6955164 | 0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs6957232 | 0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs6959189 | 0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs6969190 | 0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs6971951 | 0.86[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs6973162 | 0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs73384423 | 0.85[EUR][1000 genomes] |
rs7786639 | 0.85[EUR][1000 genomes] |
rs7790887 | 0.84[ASN][1000 genomes] |
rs953190 | 0.85[EUR][1000 genomes] |
rs953191 | 0.85[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv888524 | chr7:80107798-80723062 | Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 20 gene(s) | inside rSNPs | diseases |
2 | nsv1034690 | chr7:80520004-80987682 | Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 23 gene(s) | inside rSNPs | diseases |
3 | nsv888551 | chr7:80620397-80723062 | Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
4 | nsv888552 | chr7:80683308-80755310 | Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
5 | nsv888553 | chr7:80683308-80766407 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
6 | nsv888554 | chr7:80695828-80755310 | Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
7 | nsv888555 | chr7:80695828-80766407 | Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
8 | nsv888556 | chr7:80695828-80797794 | Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer | Chromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
9 | nsv966722 | chr7:80718235-80723540 | Inactive region | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
10 | nsv831044 | chr7:80721773-80918591 | Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
No data |