Variant report

Variant	rs2698352
Chromosome Location	chr3:111123299-111123300
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1497992	1.00[AMR][1000 genomes]
rs1948624	1.00[AMR][1000 genomes]
rs2646990	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2698326	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2698372	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2971359	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4535220	1.00[AMR][1000 genomes]
rs6804028	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460821	chr3:110637471-111501097	Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv591275	chr3:110637471-111501097	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	esv2763292	chr3:111120319-111131539	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	inside rSNPs	diseases
4	nsv522010	chr3:111121960-111131512	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111119200-111124000	Weak transcription	Aorta	Aorta

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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