Variant report

Variant	rs2699012
Chromosome Location	chr4:160305709-160305710
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17306268	0.94[AMR][1000 genomes]
rs2463988	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2699015	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2699018	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2707665	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022771	chr4:160188801-160324683	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160303600-160305800	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr4:160303800-160306200	Enhancers	Fetal Heart	heart
3	chr4:160303800-160321600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr4:160304200-160305800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr4:160304200-160307000	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr4:160304400-160305800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr4:160304400-160306400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr4:160305000-160307400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr4:160305200-160307000	Weak transcription	Left Ventricle	heart
10	chr4:160305400-160305800	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
11	chr4:160305400-160305800	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
12	chr4:160305600-160306200	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
13	chr4:160305600-160306200	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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